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Unknown (483905)
Genomics (9876)
Transcriptomics (5347)
Proteomics (2035)
Models (188)
Metabolomics (153)
Other (115)
Genomic (61)
Methylation profiling (57)
Clinical (8)
Multiomics (4)

Organisms

Homo sapiens (3610)
Mus musculus (1981)
Arabidopsis thaliana (408)
Saccharomyces cerevisiae (295)
Rattus norvegicus (192)
Schizosaccharomyces pombe (120)
Escherichia coli (85)
Caulobacter vibrioides (19)
Macaca mulatta (15)
Xenopus laevis (13)
Canis lupus familiaris (10)
cellular organisms (9)
Mammalia (4)
Pan troglodytes (4)
Equus caballus (3)
Eukaryota (2)
Murinae (2)
Opisthokonta (2)
Rattus (2)
Viridiplantae (2)
41870 (1)
Amphibia (1)
Bacteria Latreille et al. 1825 (1)
Clostridioides difficile (1)
Drosophila (1)
Human immunodeficiency virus 1 (1)
Schizosaccharomycetaceae (1)
Vesicular stomatitis virus (1)
fungal pathogen UWFP-388 (1)
unclassified eukaryotes (1)

Organisms

Homo sapiens (2426)
Mus musculus (2080)
Arabidopsis thaliana (205)
Rattus norvegicus (142)
Drosophila melanogaster (122)
Saccharomyces cerevisiae (86)
Danio rerio (74)
Caenorhabditis elegans (48)
unidentified (43)
Oryza sativa (36)
Staphylococcus aureus (34)
Escherichia coli (32)
Bos taurus (28)
Schizosaccharomyces pombe (25)
Solanum lycopersicum (24)
Zea mays (24)
Sus scrofa (23)
human gut metagenome (22)
Sorghum bicolor (21)
Gallus gallus (20)
Nitratidesulfovibrio vulgaris str. Hildenborough (19)
mouse gut metagenome (18)
Brachypodium distachyon (17)
Toxoplasma gondii (17)
Oryza sativa Japonica Group (16)
Bacillus subtilis (16)
Glycine max (15)
Bacteria (15)
Caulobacter vibrioides (14)
soil metagenome (14)

Repository

ENA (8841)
biostudies-arrayexpress (4737)
geo (1704)
pride (1704)
BioModels (173)
MassIVE (161)
MetaboLights (146)
EGA (106)
iProX (71)
dbGaP (61)
jPOST (52)
PAXDB (26)
GPMDB (15)
PanoramaPublic (14)
LINCS (12)
Cell Collective (10)
GNPS (6)
ExpressionAtlas (4)
FAIRDOMHub (3)
PMR (2)
EVA (1)
MetabolomicsWorkbench (1)
NODE (1)
PeptideAtlas (1)

Tissue

Cell culture (355)
Epithelial cell (113)
Permanent cell line cell (70)
Brain (57)
Liver (54)
Kidney (46)
2-4 mm from tip of ear primordium (1)
6-8 mm from tip of ear primordium (1)
Embryo 20 days after pollination (1)
Embryo 38 days after pollination (1)
Endosperm 12 days after pollination (1)
Endosperm crown (1)
Germinated embryo 2 days after imbibition (1)
Growth zone of leaf 8 (1)
Internode 6-7 (1)
Internode 7-8 (1)
Mature female spikelet (1)
Mature leaf 8 (1)
Mature pollen (1)
Pericarp and aleurone (1)
Primary root (1)
Root cortex (1)
Root differentiation zone (1)
Root elongation zone (1)
Secondary root (1)
Stomatal division zone of leaf 8 (1)
Symmetrical division zone of leaf 8 (1)
Unpollinated silk (1)
Vegetative meristem (1)
Cultured cells (1)

Disease

Breast cancer (50)
Normal (22)
Neuroblastoma (10)
Type 2 diabetes mellitus (7)
Cancer (3)
Glioblastoma multiforme (3)
Botulism (2)
HIV (2)
Infiltrating ductal carcinoma (2)
Carcinoma (2)
Adenocarcinoma (2)
Bacterial infectious disease (1)
Complement deficiency (1)
Diabetes mellitus (1)
Hodgkin's lymphoma (1)
Liver disease (1)
Mature T-cell and NK-cell lymphoma (1)
Skin cancer (1)
Congential heart disease (1)
Mild spinal cord injury (1)
HPV positive (1)
HIV encephalitis (1)
Uninjured (1)
Primary effusion lymphoma (PEL) (1)
Embryonal Carcinoma (1)
Unspecified peripheral T-cell lymphoma (1)
Severe malaria (1)
Bladder carcinoma (1)
Low-stage neuroblastoma (1)
Post-stasis (1)

Technology Type

Mass Spectrometry (1705)
Shotgun proteomics (886)
Bottom-up proteomics (390)
Affinity purification coupled with mass spectrometry proteomics (192)
Data-dependent acquisition (192)
Gel-based experiment (133)
Data-independent acquisition (130)
Mass spectrometry (103)
SWATH MS (69)
Top-down proteomics (45)
Mass spectrometry assay (23)
NMR spectroscopy (15)
Fluorescence intensity (12)
MEMA (11)
NMR spectroscopy assay (6)
Illumina HiSeq 2000 (4)
Affymetrix SNP 6.0 (1)
Complete Genomics (1)
ILLUMINA, Illumina HiSeq 2500, Illumina HiSeq 2000 (1)
Illumina CytoSNP 12 bead array, nanostring (1)
Illumina HiSeq 2000 (ILLUMINA), Illumina HiSeq 1500 (ILLUMINA) (1)
Illumina HiSeq 2000, Infinium HumanMethylation450 BeadChip (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2500, ILLUMINA (1)
Illumina HiSeq 2500, Illumina HiSeq 2000 (1)
Illumina HiSeq 2500, Illumina HiSeq 2000 (ILLUMINA), Illumina HiSeq 2000, Illumina (1)
Illumina HiSeq 2500, Illumina MiSeq (1)
Ion Torrent Proton, Illumina HiSeq 2000 (1)
Microwestern (1)
ESI (1)

Instrument Platform

Illumina HiSeq 2000 (87)
NextSeq 500 (63)
Illumina NovaSeq 6000 (53)
Illumina HiSeq 2500 (51)
Illumina HiSeq 4000 (34)
Illumina MiSeq (18)
Illumina HiSeq 3000 (13)
Illumina Genome Analyzer II (12)
NextSeq 550 (11)
NextSeq 2000 (10)
Illumina HiSeq 1500 (8)
Illumina Genome Analyzer IIx (6)
Illumina NovaSeq X (6)
MinION (6)
Illumina HiSeq 1000 (5)
DNBSEQ-G400 (4)
HiSeq X Ten (4)
Illumina iScan (3)
GenePix 4000A [Axon Instruments] (3)
Axon GenePix 4000B scanning hardware (3)
10x Chromium Controller (2)
IScan Illumina (2)
Scanning of was performed on an Axon 4000B scanner (2)
IScan (2)
Affymetrix GeneChip Scanner 3000 7G (2)
Other (2)
G2565BA DNA microarray scanner [Agilent] (2)
GenePix 4000B [Axon Instruments] (2)
NA (2)
Maxwell® RSC 48 Instrument (Promega, AS8500) (1)

Publication Date

2013 (793)
2014 (645)
2015 (583)
2024 (569)
2012 (560)
2016 (554)
2025 (551)
2010 (505)
2023 (465)
2026 (455)
2011 (402)
2022 (401)
2021 (386)
2020 (357)
2008 (287)
2019 (253)
2018 (240)
2009 (214)
2017 (208)
2007 (165)
2005 (100)
2006 (51)
2004 (36)
2002 (6)
2003 (4)

UNIPROT ID/AC

P04637 (10)
O15519 (6)
Q00987 (6)
Q14790 (6)
P24869 (5)
P25445 (5)
P30283 (5)
P38634 (5)
P55957 (5)
Q13158 (5)
O15111 (4)
P04551 (4)
P14635 (4)
P14753 (4)
P24864 (4)
P27824 (4)
P29350 (4)
P38987 (4)
P42212 (4)
P48023 (4)
Q9U6Y8 (4)
O14543 (3)
O14920 (3)
O60674 (3)
P00546 (3)
P06400 (3)
P07321 (3)
P19838 (3)
P20438 (3)
P24941 (3)

ENSEMBL ID

ENSG00000064012 (4)
ENSG00000101017 (3)
ENSG00000141448 (2)
ENSG00000148200 (2)
ENSG00000165556 (2)
ENSG00000165661 (2)
ENSG00000176654 (2)
ENSG00000204531 (2)
ENSBTAG00000000003.4 (1)
ENSBTAG00000000033.3 (1)
ENSBTAG00000000042.2 (1)
ENSBTAG00000000058.4 (1)
ENSBTAG00000000065.4 (1)
ENSBTAG00000000077.4 (1)
ENSBTAG00000000081.4 (1)
ENSBTAG00000000085.4 (1)
ENSBTAG00000000091.1 (1)
ENSBTAG00000000111.4 (1)
ENSBTAG00000000123.3 (1)
ENSBTAG00000000139.4 (1)
ENSBTAG00000000160.4 (1)
ENSBTAG00000000172.4 (1)
ENSBTAG00000000185.4 (1)
ENSBTAG00000000186.3 (1)
ENSBTAG00000000188.2 (1)
ENSBTAG00000000191.3 (1)
ENSBTAG00000000202.3 (1)
ENSBTAG00000000203.3 (1)
ENSBTAG00000000212.3 (1)
ENSBTAG00000000246.4 (1)

CHEBI ID

CHEBI:15428 (42)
CHEBI:33699 (8)
CHEBI:15996 (5)
CHEBI:17552 (4)
CHEBI:50406 (4)
CHEBI:15361 (2)
CHEBI:15422 (2)
CHEBI:16108 (2)
CHEBI:16474 (2)
CHEBI:16526 (2)
CHEBI:16991 (2)
CHEBI:17234 (2)
CHEBI:17754 (2)
CHEBI:18009 (2)
CHEBI:36080 (2)
CHEBI:14314 (1)
CHEBI:15343 (1)
CHEBI:15351 (1)
CHEBI:15633 (1)
CHEBI:15634 (1)
CHEBI:15636 (1)
CHEBI:15637 (1)
CHEBI:15641 (1)
CHEBI:15721 (1)
CHEBI:15740 (1)
CHEBI:15846 (1)
CHEBI:15946 (1)
CHEBI:16001 (1)
CHEBI:16027 (1)
CHEBI:16084 (1)

Metabolite Name

Creatinine (31)
Creatine (27)
Choline (26)
Betaine (24)
Adenosine (23)
Taurine (23)
Adenine (22)
Hypoxanthine (22)
Glycine (21)
Inosine (21)
L-Phenylalanine (21)
L-Tyrosine (21)
L-Glutamine (20)
L-Threonine (20)
L-Tryptophan (20)
Alanine (19)
Citric acid (19)
Cytidine (19)
L-Histidine (19)
ADP (18)
Choline (18)
Glutamine (18)
Guanine (18)
Guanosine (18)
Inosine (18)
L-Valine (18)
Leucine (18)
Myo-inositol (18)
Uracil (18)
Xanthine (18)

First Public Date

2014 (1344)
2024 (850)
2025 (775)
2023 (730)
2022 (635)
2026 (628)
2021 (623)
2020 (621)
2013 (533)
2019 (532)
2017 (424)
2018 (411)
2016 (387)
2015 (343)
2012 (3)
2010 (2)

Modelling Approach

Ordinary differential equation model (133)
Boolean model (5)
Computational model (5)
Petri net (3)
Agent-based model (2)
Constraint-based model (2)
Logical model (2)
Deep learning (1)
Differential equation model (1)
Fuzzy logic model (1)

Study status

Completed (5)
Active, not recruiting (1)
Not provided (1)
Not yet recruiting (1)

Lab affiliation

Staff Scientist Biological Systems & Engineering Division Lawrence Berkeley National Laboratory Berkeley CA 94720 (52)
Biological Sciences Division, Pacific Northwest National Laboratory (12)
Division of Cell Matrix Biology & Regenerative Medicine (L5) / Division of Cell Matrix Biology & Regenerative Medicine, University of Manchester (11)
Division Systems Biology of Signal Transduction, German Cancer Research Center (DKFZ), Heidelberg, Germany (8)
Molecular Biology and Biotechnology Division, ICAR-National Bureau of Fish Genetic Resources, Lucknow, Uttar Pradesh 226002, India (8)
University of Alabama at Birmingham, Department of Pathology, Division MCP, O'Neal Comprehensive Cancer Center (8)
Department of Leukemia, Division of Cancer Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX (7)
Lund University, Faculty of Medicine, Department of Clinical Sciences Lund, Division of Infection Medicine, Lund, Sweden (7)
Clinical Division of Fish Medicine, University of Veterinary Medicine, Vienna, Austria (5)
Division of Cardiovascular Sciences, School of Medical Science, Faculty of Biology, Medicine and Health, The University of Manchester (5)
Division of Cell Signalling and Immunology, School of Life Sciences, University of Dundee, Dundee, UK (5)
Drug Discovery Unit Wellcome Centre for Anti-Infectives Research Division of Biological Chemistry and Drug Discovery University of Dundee Dundee, DD1 5EH. UK (5)
First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China (5)
Assistant Professor Department of Medicine, Division of Endocrinology, Metabolism, and Nutrition Department of Pharmacology and Cancer Biology Duke University Medical Center (4)
Cardiovascular Division, King's College London (4)
Center for Interdisciplinary Cardiovascular Sciences, Division of Cardiovascular Medicine, Department of Medicine, Brigham Women's Hospital, Harvard Medical School, Boston, MA, United States (4)
Department of Biochemistry, University of Texas Southwestern Medical Center, Dallas, TX, USA. (4)
Division of Cell Signalling and Immunology, School of Life Sciences, University of Dundee, Dundee, DD1 5EH, Scotland, United Kingdom (4)
Division of Cell Signalling and Immunology, School of Life Sciences, University of Dundee, UK (4)
Division of Medical Inflammation Research, Dept. Medical Biochemistry and Biophysics, Karolinska Institute, Sweden (4)
German Cancer Research Center (DKFZ) Cell Signaling and Metabolism Division Head (4)
Hannover Medical School, Department of Cardiology and Angiology, Division of Molecular and Translational Cardiology, Hans Borst Center for Heart and Stem Cell Research, Hannover (4)
Institute of Molecular Biology and Biophysics, Department of Biology, ETH Zurich, Zurich, Switzerland Laboratory of Biomolecular Research, Division of Biology and Chemistry, Paul Scherrer Institute, Villigen, Switzerland (4)
King's College London (4)
Lund Stem Cell Center, Division of Molecular Hematology, Lund University, Lund, Sweden (4)
Regulatory Research Division, Biologic and Radiopharmaceutical Drugs Directorate, Health Products and Food Branch, Health Canada, Ottawa, Canada (4)
University Clinic for Poultry and Fish Medicine, University of Veterinary Medicine, Vienna, Austria (4)
1DST/NRF Centre of Excellence in Biomedical Tuberculosis research, SA MRC Centre for Tuberculosis Research, Division of Molecular Biology and Human Genetics, Department of Biomedical Science, Faculty of Medicine and Health Science, Stellenbosch University, Tygerberg, 7505, Cape Town, South Africa (3)
Carnegie Mass Spectrometry Facility (3)
Cell Signalling and Immunology Division, School of Life Sciences, University of Dundee (3)

Keyword

Capecitabine (2)
Azenosertib (1)
Bevacizumab (1)
Biomarkers (1)
Colorectal (1)
Colorectal liver metastases (1)
Digestive System Neoplasms (1)
Focal nodular hyperplasia liver (1)
Gastrointestinal Neoplasms (1)
Hemangioma liver (1)
Intrahepatic cholangiocellular carcinoma (1)
Irinotecan (1)
LB100 (1)
Levocetirizine (1)
Lung (1)
Non-digestible carbohydrate (1)
Ovarian (1)
Oxaliplatin (1)
PP2A (1)
Polydextrose (1)
Polyps (1)
Prostate (1)
Resistant starch (1)
Screening Trial (1)
Stem cells (1)
Tumor of liver (1)
WEE1 (1)

IsPrivate

False (173)

Model Flag

Non Kinetic (12)
Non Miriam (4)
Sbml Extended (1)

Submitter Keywords

Immuno-oncology (9)
Ersilia (6)
Machine Learning Model (6)
TransQST (5)
FAIR-AIML (2)
Not Peer Reviewed (1)

Classification

bacteria (339)
fungi (51)
protozoa (37)
viruses (30)
helminths (4)

Modification

Not available (5)
4-tetrahydrothiazine-3-carboxylic acid (4)
2x(15)N labeled L-lysine (3)
57.021464 (3)
4x(15)N labeled L-arginine (2)
4x(2)H labeled dimethylated L-lysine (2)
4x(2)H labeled dimethylated residue (2)
N6 (2)
N6-dimethyl-L-lysine (2)
1x(15)N labeled L-valine (1)

Study type

Transcription profiling by array (2441)
Methylation profiling by array (540)
RNA-seq of coding RNA (444)
ChIP-seq (320)
Methylation profiling by high throughput sequencing (279)
ChIP-chip by tiling array (101)
Unknown experiment type (93)
Comparative genomic hybridization by array (68)
Other (62)
RNA-seq of non coding RNA (53)
ChIP-chip by array (41)
RNA-seq of coding RNA from single cells (40)
DNA-seq (32)
Transcription profiling by tiling array (19)
Genotyping by array (19)
Bisulfite-seq (19)
RNAi profiling by array (16)
MicroRNA profiling by array (16)
High-throughput sequencing (10)
Human - Methylation microarray (9)
Cell line - High-throughput sequencing (9)
Transcription profiling by SAGE (8)
Transcription profiling by RT-PCR (8)
ATAC-seq (8)
RNA-seq of total RNA (8)
Ribo-seq (7)
Proteomic profiling by array (6)
Cell line - Methylation microarray (4)
Animal - High-throughput sequencing (4)
Human - Two-color microarray (3)

Release Date

2022 (52961)
2021 (50227)
2023 (47468)
2025 (44574)
2024 (41251)
2020 (40054)
2019 (32170)
2018 (29266)
2017 (25385)
2016 (23265)
2015 (20557)
2014 (17353)
2013 (11600)
2012 (9823)
2011 (8432)
2010 (7077)
2026 (6862)
2009 (5396)
2008 (4180)
2007 (2574)
2006 (1963)
2005 (1556)
2004 (1078)
2003 (869)
2002 (686)
2001 (587)
2000 (546)
1999 (426)
1998 (303)
1997 (103)

Location

United Kingdom (2)
United States (2)
Belgium (1)
Cyprus (1)
France (1)
Germany (1)
Greece (1)
Hong Kong (1)
Italy (1)
Poland (1)
Portugal (1)
Russia (1)
Spain (1)
Sweden (1)
Switzerland (1)

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Specific biomarkers for stochastic division patterns and starvation-induced quiescence under limited glucose levels in fission yeast

Glucose as a source of energy is centrally important to our understanding of life. We investigated the cell division-quiescence behavior of the fission yeast Schizosaccharomyces pombe under a wide range of glucose concentrations (0-111 mM). The mode of S. pombe cell division under a microfluidic per...

2017-07-06 | MTBLS316 | MetaboLights

Ecology-guided Bacillus SynCom from a rice–duckweed core reveals division of labor for concurrent growth promotion and sheath blight suppression

Ecologically derived synthetic communities can provide robust plant benefits, yet generalizable rules for assembling multifunctional consortia remain limited. We hypothesized that a “top-down” community assembled from an ecological core would yield complementary functions and resilience superior ...

2025-09-22 | MTBLS13022 | MetaboLights

Lipidomics study of the cells defective in peroxisome division

Not available

ORGANISM(S): Homo sapiens

ST002346 | MetabolomicsWorkbench

Genome-scale RNAi profiling of cell division in human tissue culture cells

Cell division is a fundamental process for multicellula organisation. Here we report a genome-scale RNAi screen in HeLa cells designed to identify human genes important for cell division. We utilized a library of endoribonuclease-prepared siRNAs (esiRNAs) for gene-silencing and used DNA content an...

ORGANISM(S): Homo sapiens

2010-06-25 | E-GEOD-9176 | biostudies-arrayexpress

Genes required for aerial growth, cell division, and chromosome segregation are targets of WhiA before sporulation in Streptomyces venezuelae.

WhiA is a highly unusual transcriptional regulator related to a family of eukaryotic homing endonucleases. WhiA is required for sporulation in the filamentous bacterium Streptomyces, but WhiA homologues of unknown function are also found throughout the Gram-positive bacteria. To better understand th...

ORGANISM(S): Streptomyces venezuelae

2016-05-20 | E-MTAB-4673 | biostudies-arrayexpress

candidate division TM7 genomosp. GTL1

candidate division TM7 genomosp. GTL1 overview

PRJNA36185 | ENA

candidate division TM7 single-cell isolate TM7c

candidate division TM7 single-cell isolate TM7c overview

PRJNA36063 | ENA

candidate division TM7 single-cell isolate TM7a

candidate division TM7 single-cell isolate TM7a overview

PRJNA36059 | ENA

candidate division TM7 single-cell isolate TM7b

candidate division TM7 single-cell isolate TM7b overview

PRJNA36061 | ENA

Resistant starch induces catabolic but suppresses immune and cell division pathways and changes the microbiome in proximal colon of male pigs

Consumption of resistant starch (RS) has been associated with various intestinal health benefits, but knowledge on its effects on global gene expression in the colon is limited. The main objective of the current study was to identify genes affected by RS in the proximal colon to infer which biologic...

ORGANISM(S): Sus scrofa

2013-10-18 | E-GEOD-45554 | biostudies-arrayexpress