Doherty C C - OmicsDI

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Unknown (1845)
Proteomics (84)
Transcriptomics (21)
Genomics (7)
Metabolomics (5)
Models (1)

Organisms

Homo sapiens (26)
Burkholderia cenocepacia K56-2Valvano (20)
Burkholderia cenocepacia (12)
Mus musculus (11)
Escherichia coli (5)
Burkholderia cenocepacia J2315 (3)
Bacillus subtilis subsp. subtilis str. 168 (2)
Arabidopsis thaliana (2)
Acinetobacter baumannii (2)
Burkholderia ubonensis MSMB22 (2)
Campylobacter fetus subsp. fetus (2)
Cryptosporidium parvum Iowa II (2)
Enterococcus faecalis (2)
Neisseria gonorrhoeae MS11 (2)
Toxoplasma gondii GT1 (2)
Caenorhabditis elegans (1)
Acinetobacter baumannii AB307-0294 (1)
Acinetobacter baumannii ACICU (1)
Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841 (1)
Burkholderia cenocepacia H111 (1)
Burkholderia dolosa AU0158 (1)
Burkholderia pseudomallei K96243 (1)
Campylobacter fetus subsp. fetus 82-40 (1)
Campylobacter hepaticus (1)
Campylobacter jejuni (1)
Coxiella burnetii (1)
Coxiella burnetii RSA 493 (1)
Cryptosporidium parvum Iowa (1)
Helicobacter pylori P12 (1)
Neisseria gonorrhoeae FA19 (1)

Organisms

Caenorhabditis elegans (1)
Homo sapiens (1)
Mus musculus (1)

Repository

pride (81)
biostudies-arrayexpress (22)
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ENA (4)
MassIVE (3)
geo (2)
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Tissue

Cell culture (3)
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Disease

Q fever (3)
Diffuse midline glioma (2)
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Lewy body dementia (1)
Malignant neoplasm of ovary (1)

Technology Type

Mass Spectrometry (81)
Shotgun proteomics (38)
Bottom-up proteomics (25)
SWATH MS (8)
Affinity purification coupled with mass spectrometry proteomics (6)
Mass spectrometry (5)
Data-dependent acquisition (3)
Data-independent acquisition (3)
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Instrument Platform

Q Exactive Plus (2)
Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - positive - reverse phase (2)
NextSeq 550 (1)
Orbitrap Exploris 480 (1)
Orbitrap Fusion Lumos (1)
Liquid Chromatography MS - Alternating (LC-MS (Alternating)) (1)
Liquid Chromatography MS – negative - reverse phase (1)
Orbitrap Fusion (Thermo Fisher Scientific) (1)
Orbitrap Fusion (Thermo Fisher Scientific)_negative (1)
Xevo G2 QTOF (Waters) (1)

Publication Date

2024 (20)
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2020 (10)
2012 (7)
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2019 (4)
2015 (2)
2014 (2)
2011 (2)
2009 (2)
2008 (2)
2022 (2)
2005 (1)
2010 (1)
2017 (1)

CHEBI ID

CHEBI:1157 (1)
CHEBI:12962 (1)
CHEBI:13389 (1)
CHEBI:138394 (1)
CHEBI:141362 (1)
CHEBI:141364 (1)
CHEBI:141366 (1)
CHEBI:142440 (1)
CHEBI:15318 (1)
CHEBI:15354 (1)
CHEBI:15356 (1)
CHEBI:15414 (1)
CHEBI:15551 (1)
CHEBI:15553 (1)
CHEBI:15555 (1)
CHEBI:15573 (1)
CHEBI:15611 (1)
CHEBI:15640 (1)
CHEBI:15682 (1)
CHEBI:15698 (1)
CHEBI:15741 (1)
CHEBI:157671 (1)
CHEBI:157672 (1)
CHEBI:15784 (1)
CHEBI:15891 (1)
CHEBI:15925 (1)
CHEBI:15956 (1)
CHEBI:15961 (1)
CHEBI:15978 (1)
CHEBI:16027 (1)

Metabolite Name

(9Z,12Z)-(8R)-8-Hydroperoxyoctadeca-9,12-dienoic acid (HPODE) (1)
(S)-Menthone 8-thioacetate (1)
15-oxo prostaglandin F2alpha (1)
2,3-dihydroxybenzoic acid (1)
2,3-dihydroxypropane-1-sulfonate (1)
2-Keto-3-deoxy-6-phosphogluconate (1)
2-deoxyguanosine (1)
3'-deoxyguanosine (1)
3,3-dimethyl-2-oxobutanoic acid (1)
3-hydroxybenzoic acid (1)
3-indolepropionic acid (3IPA) (1)
3-mercaptopropionic acid (1)
3-methyl-2-oxopentanoic acid (1)
3-oxocholic acid -H2O (OCA) (1)
4-hydroxybenzoic acid (1)
4-methyl-2-oxopentanoic acid (1)
6-phosphogluconic acid (1)
AN11736 (1)
Bilirubin (BR) (1)
Biliverdin (BLD) (1)
CAEP(32:1) (1)
CAEP(33:1) (1)
CAEP(33:2) (1)
CAEP(34:1) (1)
CAEP(35:1) (1)
CAEP(35:2) (1)
CAEP(35:3) (1)
CAEP(36:2) (1)
CAEP(36:3) (1)
CAEP(36:4) (1)

IsPrivate

False (1)

First Public Date

2024 (2)
2014 (2)

Modelling Approach

Ordinary differential equation model (1)

Study type

Transcription profiling by array (13)
ChIP-seq (3)
RNA-seq of coding RNA (3)
Transcription profiling by tiling array (1)
Other (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2022 (222)
2021 (206)
2025 (194)
2023 (192)
2024 (189)
2020 (149)
2019 (122)
2018 (96)
2016 (91)
2017 (89)
2015 (85)
2014 (48)
2026 (31)
2010 (26)
2012 (25)
2011 (25)
2013 (24)
2009 (20)
2008 (15)
2007 (5)
2006 (4)
2005 (3)
2002 (2)
2003 (1)
1999 (1)

Lab affiliation

Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Melbourne 3000, Australia (27)
Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for infection and immunity, Melbourne, 3000, Australia (10)
Department of Microbiology and Immunology, University of Melbourne, Peter Doherty Institute for Infection and Immunity, Melbourne, Victoria, Australia (5)
Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, 792 Elizabeth St, Melbourne 3000, Australia (4)
Department of Microbiology and Immunology at the Peter Doherty Institute of infection and immunity, University of Melbourne, Melbourne, Victoria, Australia (3)
Department of Microbiology and Immunology, The Peter Doherty Institute for Infection and Immunity, The University of Melbourne, 792 Elizabeth Street, Melbourne, VIC 3000, Australia. (3)
Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Parkville, Victoria 3010, Australia. (3)
Department of Microbiology and Immunology, The University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Melbourne, Australia. (2)
Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Melbourne, VIC, Australia (2)
Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Parkville, Victoria 3010, Australia (2)
Cell and Developmental Biology, Perelman School of Medicine, University of Pennsylvania (1)
Centre for Cellular and Molecular Physiology, Nuffield Department of Medicine, University of Oxford, Oxford, OX3 7BN, United Kingdom (1)
Department of Earth and Environmental Science, Columbia University; Lamont-Doherty Earth Observatory, Columbia University (1)
Department of Microbiology and Immunology at the Peter Doherty Institute of infection and immunity, University of Melbourne, Melbourne, Victoria, Australia (1)
Department of Microbiology and Immunology, Peter Doherty Institute for Infection and Immunity, The University of Melbourne, Parkville, Victoria, Australia. (1)
Department of Microbiology and Immunology, The University of Melbourne at the Peter Doherty Institute for Infection and Immunity, 792 Elizabeth St, Melbourne, 3000, Victoria, Australia. (1)
Department of Microbiology and Immunology, The University of Melbourne, at The Peter Doherty Institute for Infection and Immunity, 792 Elizabeth St, Melbourne, Victoria 3000, Australia (1)
Department of Microbiology and Immunology, University of Melbourne Peter Doherty Institute for Infection and Immunity 792 Elizabeth St, Melbourne 3000, Australia (1)
Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, 792 Elizabeth St, Melbourne 3000, Australia. (1)
Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Melbourne, VIC, Australia. (1)
Department of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences, Oncode Institute, Radboud University Nijmegen, 6525 GA Nijmegen, The Netherlands (1)
Head of Proteomics & Metabolomics Facility (1)
Helmholtz-Centre for Environmental Research - UFZ (1)
Institute of Aquaculture, University of Stirling (1)
Institute of Genetics and Cancer The University of Edinburgh Western General Hospital Crewe Road South Edinburgh EH4 2XU (1)
Newcastle University Biosciences Institute, Newcastle University, Newcastle upon Tyne, NE24HH, United Kingdom (1)
Nichollas E. Scott, PhD ARC Future Fellow and Group Leader The Department of Microbiology and Immunology Level 6 - Peter Doherty Institute | The University of Melbourne | Vic | 3000 | Australia (1)
Systems Biology Ireland, University College Dublin (1)
The Department of Microbiology and Immunology at the Peter Doherty Institute, The University of Melbourne, Victoria, Australia (1)
U o Edinburgh (1)

Tags

xref:PubMed:39642244 (1)
xref:PubMed:21483789 (1)

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Validation of the C. elegans model using juglone as a positive control for oxidative stress

To confirm the suitability of C. elegans as a model organism, preliminary gene expression experiments were performed using juglone (5-hydroxy-1,4-naphthoquinone; 97% pure; Sigma-Aldrich, St-Louis, MO), an ROS-generator, as a positive control of oxidative stress (d'Arcy Doherty et al. 1987; Leiers et...

ORGANISM(S): Caenorhabditis elegans

2014-07-17 | GSE59475 | GEO

Genomic characterization of hepatitis C virus transmitted founder variants with deep sequencing.

Not available

S-EPMC6487228 | biostudies-literature

c-Rel Is Required for IL-33-Dependent Activation of ILC2s.

Not available

S-EPMC8236704 | biostudies-literature

Mitochondrial isolation from C. burnetii-infected macrophages

Mitochondria were isolated from human THP-1 derived macrophages and purified using a sucrose gradient and hTom22-magnetic affinity purification.

ORGANISM(S): Homo sapiens (Human) Coxiella burnetii

2020-11-12 | PXD019322 | Pride

C. burnetii Mitochondria

Tryptophan C-mannosylation is critical for Plasmodium falciparum transmission.

Not available

S-EPMC9338275 | biostudies-literature

Structural plasticity of KIR2DL2 and KIR2DL3 enables altered docking geometries atop HLA-C.

Not available

S-EPMC8041999 | biostudies-literature

A Pitx2-miRNA pathway modulates cell proliferation in myoblasts and skeletal-muscle satellite cells and promotes their commitment to a myogenic cell fate.

The acquisition of a proliferating cell status from a quiescent state as well as the shift between proliferation and differentiation are key developmental steps in skeletal-muscle stem cells (satellite cells) to provide proper muscle regeneration. However, how satellite-cell proliferation is regulat...

ORGANISM(S): Mus musculus

2015-06-10 | E-GEOD-53943 | biostudies-arrayexpress

Tenascin C in Lung Diseases.

Not available

S-EPMC9953172 | biostudies-literature

2017 international meeting of the Global Virus Network.

Not available

S-EPMC7113722 | biostudies-literature

Structure, sequon recognition and mechanism of tryptophan C-mannosyltransferase.

Not available

S-EPMC10154233 | biostudies-literature