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MetabolomicsExploring the Glucose Fluxotype of the E. coli y-ome Using High-Resolution Fluxomics
We have developed a robust workflow to measure high-resolution fluxotypes (metabolic flux phenotypes) for large strain libraries under fully controlled growth conditions. This was achieved by optimizing and automating the whole high-throughput fluxomics process and integrating all relevant software ...
2021-05-13 | MTBLS2188 | MetaboLights
MetabolomicsShort-term changes in the serum metabolome after laparoscopic sleeve gastrectomy and Roux-en-Y gastric bypass

INTRODUCTION: Bariatric surgery is known to be the most effective treatment for weight loss in obese patients and for the rapid remission of obesity-related comorbidities. These short-term improvements result from not only limited digestion or absorption but also dynamic changes ...

2022-03-17 | MTBLS2472 | MetaboLights
MetabolomicsNMR based metabolomics study of Y2 receptor activation by neuropeptide Y in the SK-N-BE2 human neuroblastoma cell line
Neuropeptide Y (NPY) and its Y2 receptors (Y2R) play an important role in regulating growth of various tumors and are highly expressed in human neuroblastoma brain tumors. Cell lines derived from neuroblastoma brain tumors provide a good model to study the consequences of NPY activation of Y2R in tu...
2014-10-01 | MTBLS104 | MetaboLights
ModelsCharusanti2011 - Y. pestis (iPC815)
FROG and miniFROG Reports for the organism Yersinia pestis. These models originate from BiGG Models Database: A Database of Genome-Scale Metabolic Models (http://bigg.ucsd.edu/). Copyright © 2019 The Regents of the University of California To cite BiGG Models Database, please ...
2024-10-15 | BIOMD0000001082 | BioModels
FROG 
ProteomicsFecal Transplant from Roux-Y-Gastric-Bypass rat model into a diet induced obesity rat model
Investigating alterations the intestinal microbiome in a diet induced obesity (DIO) rat model after fecal transplant from rats, which underwent Roux-Y-Gastric-Bypass surgery (RYGB). The microbiomes of the RYGB-donor rats, the DIO rats, and DIO rats after receiving the fecal transplant from the RYGB ...
ORGANISM(S): Rattus norvegicus (Rat) 
2022-08-12 | PXD026606 | Pride
Roux-y-gastric bypass surgery Metaproteomics Microbiome Obesity Rat Anti-biotics 
GenomicsViral Mimicry by Endogenous Y-RNAs Contributes to Antiviral Immunity [DV-4]
Viral Mimicry by Endogenous Y-RNAs Contributes to Antiviral Immunity [DV-4]
PRJNA556650 | ENA
GenomicsViral Mimicry by Endogenous Y-RNAs Contributes to Antiviral Immunity [MV]
Viral Mimicry by Endogenous Y-RNAs Contributes to Antiviral Immunity [MV]
PRJNA556652 | ENA
GenomicsViral Mimicry by Endogenous Y-RNAs Contributes to Antiviral Immunity [MVseq2]
Viral Mimicry by Endogenous Y-RNAs Contributes to Antiviral Immunity [MVseq2]
PRJNA556653 | ENA
ProteomicsVerticillium dahliae Frq and Frh form a Frq-Frh complex in dependence on arginine 806 (R806) of Frh
The plant pathogenic fungus Verticillium dahliae has homologs of the clock genes [Cascant-Lopez et al., 2020], which are well described in Neurospora crassa [Diernfellner et al., 2020]. In N. crassa, frequency (Frq) and the Frq-interacting RNA helicase (Frh) interact and form the Frq-Frh complex [Ch...
ORGANISM(S): Verticillium dahliae JR2 
2023-07-12 | PXD041716 | Pride
Frh Clock proteins Frq-interacting rna helicase Frq Verticillium dahliae jr2 Frequency 
MetabolomicsBridging Targeted (Zeno MRM-HR) and Untargeted (SWATH) LC–HRMS in a Single Run for Sensitive Exposomics

Traditionally, chemical exposure has been assessed by low-resolution mass spectrometry via targeted approaches due to the typically extremely low concentration of such compounds in biological samples. Nevertheless, untargeted approaches are now becoming a promising tool for a broader investigatio...

2025-08-28 | MTBLS10565 | MetaboLights
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