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MetabolomicsMulti-omics analyses of 398 foxtail millet accessions reveal genomic regions associated with domestication, metabolite traits and anti-inflammatory effects
Not available
ORGANISM(S): Foxtail millet (Setaria italica) 
ST002168 | MetabolomicsWorkbench
TranscriptomicsGenomic dissection of small RNAs in wild rice (O.rufipogon): lessons for rice domestication [degradome]
The lack of MIRNA set and genome sequence of O. rufipogon (the ancestor of the cultivated rice) has limited to answer the role of MIRNA genes in rice domestication.In this study, a genome, three small RNA populations and a degradome of O.rufipogon were sequenced by Illumina platform and miRNA expres...
ORGANISM(S): Oryza rufipogon 
2012-08-10 | E-GEOD-39307 | biostudies-arrayexpress
TranscriptomicsDomestication causes large-scale effects on gene expression in rainbow trout
This SuperSeries is composed of the following subset Series: GSE16889: Domestication causes large-scale effects on gene expression in rainbow trout: Analysis of the brain transcriptome GSE16897: Domestication causes large-scale effects on gene expression in rainbow trout: Analysis of the liver trans...
ORGANISM(S): Oncorhynchus mykiss 
2010-05-16 | E-GEOD-16903 | biostudies-arrayexpress
TranscriptomicsThe role of cis regulatory evolution in Zea Mays domestication
Modification of cis regulatory elements to produce differences in gene expression level, localization, and timing is an important mechanism by which organisms evolve divergent adaptations. To examine gene regulatory change during the domestication of maize from its wild progenitor, teosinte, we asse...
ORGANISM(S): Zea mays 
2014-11-06 | E-GEOD-61810 | biostudies-arrayexpress
TranscriptomicsEffects of domestication and GH transgenesis on mRNA profiles in rainbow trout
Growth rate can be genetically modified in many vertebrates by domestication and selection, and more recently by transgenesis overexpressing growth factor genes (e.g. growth hormone, GH). While the phenotypic end consequence is similar, it is currently not clear whether the same modifications to phy...
ORGANISM(S): Oncorhynchus mykiss 
2013-12-03 | E-GEOD-47562 | biostudies-arrayexpress
TranscriptomicsDomestication Effects on Stress Induced Steroid Secretion and Adrenal Gene Expression in Chickens
Background Understanding the genetic basis of phenotypic diversity is a challenge in contemporary biology. Domestication provides a model for unravelling aspects of this, for example with respect to stress sensitivity. Ancestral Red Junglefowl (RJF) show more fearful behaviour and a more pronounced ...
ORGANISM(S): Gallus gallus 
2015-10-30 | E-MTAB-3622 | biostudies-arrayexpress
TranscriptomicsDomestication causes large-scale effects on gene expression in rainbow trout: Analysis of the muscle transcriptome
Domestication has produced faster-growing strains of animals for use in agriculture, but selection has been applied with little knowledge of the underlying genetic changes that arose throughout the process. Mammals and birds have been domesticated for thousands of years whereas fish have been domes...
ORGANISM(S): Oncorhynchus mykiss 
2010-05-16 | E-GEOD-16901 | biostudies-arrayexpress
TranscriptomicsDomestication causes large-scale effects on gene expression in rainbow trout: Analysis of the brain transcriptome
Domestication has produced faster-growing strains of animals for use in agriculture, but selection has been applied with little knowledge of the underlying genetic changes that arose throughout the process. Mammals and birds have been domesticated for thousands of years whereas fish have been domes...
ORGANISM(S): Oncorhynchus mykiss 
2010-05-16 | E-GEOD-16889 | biostudies-arrayexpress
TranscriptomicsDomestication causes large-scale effects on gene expression in rainbow trout: Analysis of the liver transcriptome
Domestication has produced faster-growing strains of animals for use in agriculture, but selection has been applied with little knowledge of the underlying genetic changes that arose throughout the process. Mammals and birds have been domesticated for thousands of years whereas fish have been domes...
ORGANISM(S): Oncorhynchus mykiss 
2010-05-16 | E-GEOD-16897 | biostudies-arrayexpress
Genomicsamaranth domestication
Repeated domestication attempts of an ancient new-world crop and the genetic control of seed color adaptation
PRJEB30531 | ENA
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