Dong S M SM - OmicsDI

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Unknown (255)
Transcriptomics (20)
Genomics (16)
Proteomics (15)
Metabolomics (9)

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Homo sapiens (30)
Daphnia pulex (9)
Mus musculus (6)
Ovis aries (2)
Acyrthosiphon pisum (1)
Brachypodium distachyon (1)
Escherichia coli (1)
Triticum aestivum (1)

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biostudies-arrayexpress (22)
EGA (14)
pride (14)
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iProX (1)

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Disease

Breast cancer (1)
Disease free (1)
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Technology Type

Mass Spectrometry (14)
Mass spectrometry (7)
Affinity purification coupled with mass spectrometry proteomics (3)
Gel-based experiment (3)
Shotgun proteomics (3)
NMR spectroscopy (2)
Bottom-up proteomics (2)
Illumina HiSeq 2500, Illumina HiSeq 2000 (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Data-dependent acquisition (1)
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Instrument Platform

Liquid Chromatography MS - positive - reverse phase (4)
Liquid Chromatography MS - negative - reverse phase (3)
Direct infusion MS - positive (2)
Illumina HiSeq 2500 (1)
Direct infusion MS - negative (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive (1)
Nuclear Magnetic Resonance (NMR) (1)
Nuclear Magnetic Resonance (NMR) - (1)

Publication Date

2011 (10)
2023 (4)
2021 (4)
2015 (3)
2014 (3)
2025 (3)
2018 (3)
2013 (2)
2012 (2)
2022 (2)
2024 (2)
2019 (2)
2010 (1)
2008 (1)
2005 (1)
2026 (1)
2020 (1)
2016 (1)

CHEBI ID

CHEBI:16919 (3)
CHEBI:17154 (3)
CHEBI:17368 (3)
CHEBI:18237 (3)
CHEBI:25017 (3)
CHEBI:28044 (3)
CHEBI:28300 (3)
CHEBI:64525 (3)
CHEBI:66848 (3)
CHEBI:85700 (3)
CHEBI:132032 (2)
CHEBI:132033 (2)
CHEBI:132034 (2)
CHEBI:132035 (2)
CHEBI:132036 (2)
CHEBI:132037 (2)
CHEBI:132038 (2)
CHEBI:132039 (2)
CHEBI:13389 (2)
CHEBI:134239 (2)
CHEBI:134241 (2)
CHEBI:134243 (2)
CHEBI:134270 (2)
CHEBI:134428 (2)
CHEBI:134429 (2)
CHEBI:134435 (2)
CHEBI:134448 (2)
CHEBI:134451 (2)
CHEBI:134490 (2)
CHEBI:136225 (2)

Metabolite Name

Carnosine (2)
Creatine (2)
Hypoxanthine (2)
2-oxoglutarate (1)
3-hydroxybutyrate (1)
5'-CMP (1)
5-Hydroxy-L-tryptophan (1)
Acetate (1)
Adenine (1)
Adenosine diphosphate (1)
Adenosine monophosphate (1)
Agmatine (1)
Alanine (1)
Asparatate (1)
CL(66:5) (1)
CL(68:6) (1)
CL(70:4) (1)
CL(70:5) (1)
CL(70:6) (1)
CL(70:7) (1)
CL(70:9) (1)
CL(71:7) (1)
CL(72:10) (1)
CL(72:6) (1)
CL(72:7) (1)
CL(72:8) (1)
CL(72:9) (1)
CL(74:10) (1)
CL(74:11) (1)
CL(74:12) (1)

Study type

Transcription profiling by array (13)
Transcription profiling by tiling array (4)
RNA-seq of coding RNA (2)
DNA-seq (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of non coding RNA (1)

Release Date

2024 (45)
2025 (33)
2023 (30)
2021 (26)
2022 (24)
2020 (20)
2011 (16)
2015 (11)
2014 (11)
2018 (10)
2019 (9)
2013 (8)
2016 (8)
2026 (7)
2017 (7)
2012 (5)
2010 (4)
2008 (1)
2005 (1)
2009 (1)

Lab affiliation

1Department of Pathophysiology, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, Shanghai Jiao Tong University School of Medicine (SJTU-SM), Shanghai 200025, China. 2Institute of Health Sciences, Shanghai Institutes for Biological Sciences of Chinese Academy of Sciences and SJTU-SM, Shanghai 200025, China. (1)
APAF, Macquarie University (1)
Brain Tumor Center, Division of Experimental Hematology and Cancer Biology, Cincinnati Children’s Hospital Medical Center, Cincinnati, OH 45229, USA (1)
China. Beijing. Capital Normal University. College of Life Science. Lab of molecular genetics and Proteomics. (1)
College of Life Science, Capital Normal University, Beijing 100048, China (1)
Department of Laboratory Medicine and Pathology, Mayo Clinic, USA (1)
Department of Pathophysiology, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, Rui-Jin Hospital, Shanghai Jiao Tong University School of Medicine (SJTU-SM), Shanghai 200025, China. (1)
Department of Pathophysiology, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, Rui-Jin Hospital, and State Key Laboratory of Oncogenes and Related Genes and Chinese Academy of Medical Sciences Research Unit (NO.2019RU043), Shanghai Cancer Institute, Shanghai Jiao Tong University School of Medicine, Shanghai 200025, China. (1)
Division of Infection and Immunity/Systems Immunity University Research Institute, Cardiff University (1)
Institute of Computing Technology, CAS (1)
Key Laboratory for Experimental Teratology of the Ministry of Education, Advanced Medical Research Institute, Qilu Hospital, Cheeloo College of Medicine, Shandong University (1)
Member Cell and Molecular Biology Department St. Jude Children's Research Hospital Memphis, TN-38105 (1)
National Health Commission Key Laboratory of Parasitic Disease Control and Prevention, Jiangsu Provincial Key Laboratory on Parasite and Vector Control Technology, Jiangsu Institute of Parasitic Diseases, Wuxi, Jiangsu, China (1)
Professor and Deputy Director, Center for Systems Biology and Molecular Medicine, Yenepoya Research Centre, Yenepoya (Deemed to be University), University Road, Deralakatte, Mangalore 575018, India (1)

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Reanalysis of Data-dependent acquisition based proteomic datasets of Mycobacterium avium subsp. paratuberculosis, Mycobacterium marinum and Mycobacterium vaccae

Detection of species-specific proteotypic peptides for accurate and easy characterization of infectious non-tuberculous mycobacteria such as Mycobacterium avium subsp. paratuberculosis, Mycobacterium marinum and Mycobacterium vaccae is essential. Therefore, we carried out reanalysis of publicly avai...

ORGANISM(S): Acyrthosiphon pisum (Pea aphid)

2024-03-07 | PXD045965 | Pride

Long-range joining of intra-chromosomal DNA double-strand breaks

Antibody class switch recombination (CSR) in B lymphocytes joins two DNA double-strand breaks (DSBs) lying 100 to 200 kilobases (kb) apart within switch (S) regions in the immunoglobulin heavy chain locus (IgH). CSR-activated B lymphocytes generate multiple S-region DSBs in the donor Sm and in a do...

ORGANISM(S): Mus musculus

2014-01-03 | E-GEOD-53755 | biostudies-arrayexpress

Machine learning identified an Alzheimer's disease-related FDG-PET pattern which is also expressed in Lewy body dementia and Parkinson's disease dementia.

Not available

S-EPMC6125295 | biostudies-literature

Phase III study of cisplatin with or without S-1 in patients with stage IVB, recurrent, or persistent cervical cancer.

Not available

S-EPMC6162273 | biostudies-literature

Gibberellin-Induced Transcription Factor SmMYB71 Negatively Regulates Salvianolic Acid Biosynthesis in Salvia miltiorrhiza.

Not available

S-EPMC11679863 | biostudies-literature

Nuclear PTEN safeguards pre-mRNA splicing to link Golgi apparatus for its tumor suppressive role.

Not available

S-EPMC6008332 | biostudies-literature

Schistosoma japonicum peptide SJMHE1 promotes peripheral nerve regeneration via macrophage migrasome-derived miR-26b-5p targeting the PTEN/AKT axis.

Not available

S-EPMC12607197 | biostudies-literature

Carbon nanolayer-mounted single metal sites enable dipole polarization loss under electromagnetic field.

Not available

S-EPMC11494010 | biostudies-literature

Evolutionary Diversification of Duplicated Genes; Experiments B-I, M-P

This study measured the rates at which duplicated genes in the Daphnia pulex genome diverge in function, based on significant differences in their gene expression when paralogs of various ages were tested across 8 to 12 contrasting conditions. The conditions were designated A to L. The number and d...

ORGANISM(S): Daphnia pulex

2011-02-01 | E-GEOD-25843 | biostudies-arrayexpress

Genetic diversity of spike, 3a, 3b and e genes of infectious bronchitis viruses and emergence of new recombinants in Korea.

Not available

S-EPMC3640513 | biostudies-literature

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