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TranscriptomicsEthylene and 1-MCP differentially regulate gene expression during onion (Allium cepa L.) sprout suppression
Onion is regarded as non-climacteric. In onion, ethylene can suppress sprouting however, the ethylene binding inhibitor, 1-MCP can also suppress sprout growth although it is unknown how ethylene and 1-MCP elicit the same response. In this study, onion bulbs were treated with 10 μL L-1 ethylene or 1...
ORGANISM(S): Allium cepa 
2011-06-29 | E-GEOD-27132 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of lager yeast to investigate carbohydrate metabolism and the lager yeast transcriptome during brewery fermentation
The fermentable carbohydrate composition of wort and the manner in which it is utilised by yeast during brewery fermentation has a direct influence on fermentation efficiency and quality of the finished product. In this study the response of a brewing yeast strain to changes in wort fermentable carb...
ORGANISM(S): Saccharomyces cerevisiae 
2008-06-18 | E-GEOD-10205 | biostudies-arrayexpress
TranscriptomicsSingle-cell RNAseq of Human T lymphocyte derived from H7N9 infected patients
Comparing transcriptomes of CD8 T cells derived from a fatal H7N9 influenza infection with those derived from a patient that survived the infection. Specifically, CD38+ HLA-DR+ cells were sorted by flow cytometry at different sampling time-points, and the transcriptome was analysed using Smart-seq2.
ORGANISM(S): Homo sapiens 
2018-01-30 | E-MTAB-6379 | biostudies-arrayexpress
TranscriptomicsSigG does not control gene expression in response to DNA damage in Mycobacterium tuberculosis H37Rv.
The expression of the Mycobacterium tuberculosis sigma factor, sigG, was induced by a variety of DNA damaging agents but inactivation of sigG did not affect induction of gene expression or bacterial survival under these conditions. Therefore, SigG does not control the DNA repair response of M. tuber...
ORGANISM(S): Mycobacterium tuberculosis 
2011-04-15 | E-BUGS-111 | biostudies-arrayexpress
TranscriptomicsPhysiological, biochemical and transcriptional analysis of onion bulbs during storage
Physiological and biochemical changes occur in onion (Allium cepa L.) bulbs during the transition from dormancy to sprout suppression and subsequent sprout growth. These include changes in the concentrations of flavor compounds, carbohydrates, mineral elements and plant growth regulators (PGRs). Det...
ORGANISM(S): Allium cepa 
2012-01-15 | E-GEOD-28159 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of lager brewing yeast strain during industrial propagation and fermentation
Commercial brewing yeast strains are exposed to a number of potential stresses including oxidative stress. The aim of this investigation was to measure the physiological and transcriptional changes of yeast cells during full-scale industrial brewing processes with a view to determining the environme...
ORGANISM(S): Saccharomyces cerevisiae 
2008-06-16 | E-GEOD-9423 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Staphylococcus aureus treated with tigecycline to determine the effect of the expression of virulence factors in biofilm-associated cells
Data is also available from BuG@Sbase
ORGANISM(S): Staphylococcus aureus 
2009-11-25 | E-BUGS-81 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Mycobacterium avium subspecies paratuberculosis Types I, II and III genomes by pan-genome microarray analysis
Data is also available from http://bugs.sgul.ac.uk/E-BUGS-69
ORGANISM(S): Mycobacterium avium 
2009-01-16 | E-BUGS-69 | biostudies-arrayexpress
TranscriptomicsInactivation of the GacA response regulator in Pseudomonas fluorescens Pf-5 has far-reaching transcriptomic consequences
The GacS/GacA signal transduction system is a central regulator in Pseudomonas spp., including the biological control strain P. fluorescens Pf-5, in which GacS/GacA controls the production of secondary metabolites and exoenzymes that suppress plant pathogens. A whole genome oligonucleotide microarra...
ORGANISM(S): Pseudomonas fluorescens Pf-5 
2010-03-03 | E-GEOD-16898 | biostudies-arrayexpress
TranscriptomicsGene expression response to copper toxicity between coastal and open ocean strains of marine Synechococcus
Marine cyanobacteria are thought to be the most sensitive of the phytoplankton groups to copper toxicity, yet little is known of the transcriptional response of marine Synechococcus to copper shock. Global transcriptional response to two levels of copper shock was assayed in both a coastal and an o...
ORGANISM(S): Synechococcus sp. CC9311 
2010-05-17 | E-GEOD-13910 | biostudies-arrayexpress
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