Du Bin B - OmicsDI

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Unknown (92)
Genomics (12)
Proteomics (10)
Transcriptomics (7)
Metabolomics (3)

Organisms

Homo sapiens (11)
Mus musculus (8)
Physcomitrium sp. Goffinet 11574 (4)
Odocoileus virginianus (4)
Trichuris muris (4)
Didelphis virginiana (4)
Lontra canadensis (4)
Ursus americanus (4)
Asterina gibbosa (in: starfish) (4)
Ampulex compressa (4)
Marmota monax (4)
Brucella melitensis (4)
Crotalus vegrandis (4)
Chromera velia (4)
Acropora digitifera (4)
Trichodesmium sp. (4)
Mycobacterium sp. GN-10803 (4)
Geobacillus thermoleovorans (4)
Simian immunodeficiency virus (4)
Heterobasidion annosum (4)
Tetranychus urticae (4)
Angiostrongylus cantonensis (4)
Pangasianodon hypophthalmus (4)
Creolimax fragrantissima (4)
Photobacterium phosphoreum (4)
Musa acuminata subsp. malaccensis (4)
Arabidopsis thaliana (2)
Escherichia coli BW25113 (1)
Oryza sativa Japonica Group (1)
Aspergillus niger (1)

Repository

biostudies-arrayexpress (13)
EGA (6)
iProX (5)
pride (4)
MetaboLights (3)
MassIVE (1)

Tissue

Macrophage (1)
Leaf (1)
Blood (1)

Disease

Legionnaires' disease (1)

Technology Type

Mass Spectrometry (4)
Shotgun proteomics (3)
Mass spectrometry (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Illumina HiSeq 2000 (1)
Mass spectrometry assay (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (2)
BGIseq500 (1)
BGISEQ-500 (1)
Illumina MiSeq (1)
Illumina HiSeq 2000 (1)
NextSeq 500 (1)
Q Exactive HF-X (1)
5975C Series GC/MSD (Agilent) (1)
Liquid Chromatography MS - negative - HILIC (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2014 (4)
2013 (3)
2011 (3)
2021 (3)
2019 (2)
2026 (2)
2022 (2)
2017 (2)
2024 (1)
2010 (1)
2023 (1)
2018 (1)

CHEBI ID

CHEBI:196951 (1)
CHEBI:196950 (1)
CHEBI:36405 (1)
CHEBI:25097 (1)
CHEBI:24848 (1)
CHEBI:28976 (1)
CHEBI:28260 (1)
CHEBI:24266 (1)
CHEBI:22599 (1)
CHEBI:17992 (1)
CHEBI:29888 (1)
CHEBI:16217 (1)
CHEBI:16113 (1)
CHEBI:17553 (1)
CHEBI:17822 (1)
CHEBI:15611 (1)
CHEBI:26271 (1)
CHEBI:25094 (1)
CHEBI:15978 (1)
CHEBI:18237 (1)
CHEBI:22660 (1)
CHEBI:17050 (1)
CHEBI:28757 (1)
CHEBI:37684 (1)
CHEBI:26986 (1)
CHEBI:17234 (1)
CHEBI:18257 (1)
CHEBI:24898 (1)
CHEBI:25017 (1)
CHEBI:30832 (1)

Metabolite Name

No match: 1030.08 (1)
No match: 2824.20 (1)
No match: 1419.85 (1)
No match: 2955.81 (1)
No match: 2560.29 (1)
No match: 1725.47 (1)
No match: 2577.97 (1)
No match: 2058.53 (1)
No match: 2937.35 (1)
No match: 1155.19 (1)
No match: 2578.39 (1)
No match: 1909.62 (1)
No match: 1898.87 (1)
No match: 2510.90 (1)
No match: 2590.17 (1)
No match: 2629.75 (1)
No match: 1289.60 (1)
No match: 1308.63 (1)
No match: 1249.16 (1)
No match: 2520.76 (1)
No match: 1350.74 (1)
No match: 1054.48 (1)
No match: 1693.92 (1)
No match: 1888.53 (1)
No match: 2022.86 (1)
No match: 2028.75 (1)
No match: 1604.75 (1)
No match: 1003.87 (1)
No match: 1366.52 (1)
No match: 1389.34 (1)

Study type

Methylation profiling by high throughput sequencing (4)
Transcription profiling by array (3)
RNA-seq of coding RNA (3)
ChIP-seq (1)
DNA-seq (1)
Methylation profiling by array (1)

Release Date

2025 (17)
2023 (16)
2022 (12)
2024 (10)
2021 (10)
2018 (7)
2020 (6)
2011 (5)
2014 (4)
2019 (3)
2013 (3)
2017 (3)
2016 (3)
2010 (2)
2026 (2)
2015 (1)
2008 (1)

Lab affiliation

Institute of Marine Sciences, Guangdong Provincial Key Laboratory of Marine Biotechnology and STU-UNIVPM Joint Algal Research Center, College of Sciences, Shantou University, Shantou, Guangdong, China; Southern Marine Science and Engineering Guangdong Laboratory, Guangzhou, Guangdong, 515063, China. (1)
The Hong Kong University of Science and Technology (1)
U1205 Inserm (1)
Center for Integrated Protein Science Munich (CIPSM) at the Department of Chemistry, Technische Universität München, Lichtenbergstraße 4, 85747 Garching b. München (1)

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Cytokine expression in macrophages and splenic CD4+ T-cells

This experiment was designed to study the cytokine gene expression profile of macrophage under 50uM DU exposure. the experiment was repeated three time, with duplicate spots for each gene on the array. Conclusion: DU exposure induces the expressions of IL-10, NF-kBP65, and Midkine and other cytokine...

ORGANISM(S): Mus musculus

2010-06-10 | E-GEOD-2333 | biostudies-arrayexpress

Intra-bin correction and inter-bin compensation of respiratory motion in free-running five-dimensional whole-heart magnetic resonance imaging.

Not available

S-EPMC10987330 | biostudies-literature

Production of chain-extended cinnamoyl compounds by overexpressing two adjacent cluster-situated LuxR regulators in Streptomyces globisporus C-1027

Natural products from microorganisms are important sources for drug discovery. With the development of high-throughput sequencing technology and bioinformatics, a large amount of uncharacterized biosynthetic gene clusters (BGCs) in microorganisms have been found, which show the potential for nove...

2023-09-06 | MTBLS5152 | MetaboLights

A mouse model of endemic Burkitt translocations reveals the long-range boundaries of Ig-mediated oncogene deregulation

Igh/Myc translocations underlie both sporadic Burkitt lymphoma (BL) and the endemic clinical form affecting African children infected with malaria. However, while sporadic translocations decapitate Myc from 5' proximal regulatory elements, most endemic events occur hundreds of kilobases away from My...

ORGANISM(S): Mus musculus

2013-07-04 | E-GEOD-48514 | biostudies-arrayexpress

Genetic variant in CXCL13 gene is associated with susceptibility to intrauterine infection of hepatitis B virus.

Not available

S-EPMC4876436 | biostudies-literature

ICoVeR - an interactive visualization tool for verification and refinement of metagenomic bins.

Not available

S-EPMC5414344 | biostudies-literature

Maintenance of DNA methylation in embryonic stem cells depends on the histone H3K9 methyltransferases (K9 KO ChIP-Seq)

During mammalian development DNA methylation patterns need to be reset in primordial germ cells (PGC) and preimplantation embryos. However, many retro-transposons and imprinted genes are resistant to such global epigenetic reprogramming via hitherto undefined mechanisms. Here, we report that some of...

ORGANISM(S): Mus musculus

2014-06-03 | E-GEOD-47887 | biostudies-arrayexpress

Mass spectrometry-based direct detection of multiple types of protein thiol modifications in pancreatic beta cells under endoplasmic reticulum stress

A 2D-LC-MS/MS strategy coupled with TMT-10 labeling was applied to mouse pancreatic beta cells (hetaTC-6) induced with ER stress by Thapsigargin to study the global proteome and protein cysteine PTM changes under ER stress. Samples were digested with trypsin, labeled with 10-plex TMT, then analyzed ...

ORGANISM(S): Mus Musculus (ncbitaxon:10090)

2021-05-29 | MSV000087543 | MassIVE

Identification and Genome-Wide Gene Expression Perturbation of a Trisomy in Chinese Kale (Brassica oleracea var. alboglabra).

Not available

S-EPMC10536521 | biostudies-literature

Maintenance of DNA methylation in embryonic stem cells depends on the histone H3K9 methyltransferases (K9 KO 5hmC-capture-seq)

ORGANISM(S): Mus musculus

2014-06-03 | E-GEOD-47892 | biostudies-arrayexpress