Du He H - OmicsDI

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Unknown (1858)
Proteomics (47)
Transcriptomics (15)
Metabolomics (8)
Multiomics (3)
Genomics (2)
Models (1)

Organisms

Homo sapiens (29)
Mus musculus (14)
Rattus norvegicus (5)
Zea mays (3)
Staphylococcus aureus (2)
cellular organisms (1)
Rhodococcus opacus (1)
Oryza sativa (1)
Arabidopsis thaliana (1)
Gossypium hirsutum (1)
Macaca fascicularis fascicularis (1)
Brucella abortus 2308 (1)
Escherichia coli (1)
Glycine max (1)
Neurospora crassa (1)
Streptococcus pneumoniae D39 (1)

Repository

pride (27)
biostudies-arrayexpress (16)
iProX (15)
MetaboLights (6)
PeptideAtlas (3)
GNPS (2)
MassIVE (2)
BioModels (1)
EGA (1)

Tissue

Cell culture (10)
Heart (4)
Others (3)
Liver (3)
Brain (2)
Epithelial cell (2)
Kidney (2)
Macrophage (2)
Permanent cell line cell (2)
Brown adipose tissue (1)
Cardiac muscle cell (1)
Epididymal white adipose tissue (1)
HEK-293T cell (1)
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Lung (1)
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Root (1)
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Skin (1)
Spleen (1)
Subcutaneous adipose tissue (1)
Sympathetic neuron (1)

Disease

Breast cancer (3)
Bacterial infectious disease (1)
Papillary thyroid carcinoma (1)
Prostate carcinoma (1)
Brain ischemia (1)
Cardiovascular system disease (1)
Disease free (1)
Epidermolysis bullosa (1)
Pancreatic cancer (1)

Technology Type

Mass Spectrometry (27)
Shotgun proteomics (13)
Bottom-up proteomics (5)
Mass spectrometry (4)
Affinity purification coupled with mass spectrometry proteomics (4)
Mass spectrometry assay (2)
SWATH MS (2)
Top-down proteomics (2)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Data-independent acquisition (1)
DiaPASEF (1)
Gel-based experiment (1)
Proteogenomics (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (4)
Liquid Chromatography MS - positive - hilic (4)
Q Exactive HF (2)
TripleTOF 6600 (2)
Liquid Chromatography MS - - reverse phase (2)
Liquid Chromatography MS - negative - hilic (2)
LTQ Orbitrap Elite (2)
Illumina HiSeq 2000 (1)
Liquid Chromatography MS - positive - reverse phase (1)
QExactive (1)

Publication Date

2025 (12)
2024 (8)
2020 (7)
2021 (7)
2022 (7)
2023 (6)
2014 (5)
2013 (4)
2015 (3)
2009 (2)
2008 (2)
2026 (2)
2019 (2)
2018 (2)
2011 (1)
2010 (1)
2007 (1)

UNIPROT ID/AC

A0A024R563 (3)
A0A024R8H9 (3)
A0A024RAN2 (3)
A0A024RC46 (3)
A0A087WUD1 (3)
A0A087WVZ5 (3)
A0A087WWK8 (3)
A0A087WXI0 (3)
A0A087WZE9 (3)
A0A087X1S3 (3)
A0A0A0MR66 (3)
A0A0A0MS51 (3)
A0A0A0MSA7 (3)
A0A0B4J220 (3)
A0A0C4DG89 (3)
A0A0C4DGT3 (3)
A0AV96 (3)
A0AVT1 (3)
A0FGR8 (3)
A0FGR8-2 (3)
A0FGR8-6 (3)
A0JLT2 (3)
A0JNW5 (3)
A0MZ66 (3)
A0PJW6 (3)
A0PK00 (3)
A1A4S6 (3)
A1L0T0 (3)
P06239 (1)
P29350 (1)

ENSEMBL ID

ENSG00000147251 (3)
ENSG00000170477 (3)
ENSG00000247315 (3)

CHEBI ID

CHEBI:116314 (3)
CHEBI:15354 (3)
CHEBI:16040 (3)
CHEBI:16566 (3)
CHEBI:16704 (3)
CHEBI:16708 (3)
CHEBI:16737 (3)
CHEBI:17154 (3)
CHEBI:17368 (3)
CHEBI:17568 (3)
CHEBI:17821 (3)
CHEBI:18295 (3)
CHEBI:18344 (3)
CHEBI:18723 (3)
CHEBI:26078 (3)
CHEBI:28123 (3)
CHEBI:29009 (3)
CHEBI:36592 (3)
CHEBI:46961 (3)
CHEBI:74475 (3)
CHEBI:132983 (2)
CHEBI:138560 (2)
CHEBI:143726 (2)
CHEBI:144238 (2)
CHEBI:15348 (2)
CHEBI:15428 (2)
CHEBI:1547 (2)
CHEBI:15603 (2)
CHEBI:15652 (2)
CHEBI:15674 (2)

Metabolite Name

Adenine (2)
Creatinine (2)
Hypoxanthine (2)
Myristoleic acid (2)
Pantothenol (2)
Parabanic Acid (2)
Sinapyl alcohol (2)
Uracil (2)
Uridine (2)
(+)-Camphor (1)
(+)-Catechin (1)
(+)-Elaeocarpine (1)
(+)-Gallocatechin (1)
(+)-Norephedrine (1)
(+)-gamma-Hydroxy-L-homoarginine (1)
(+/-)-1-Phenylethylmercaptan (1)
(+/-)-2-(4'-Isobutylphenyl)propionitrile (1)
(+/-)-Ethyl 2-hydroxy-2-methylbutyrate (1)
(-)-Caaverine (1)
(-)-Carvone (1)
(-)-Epicatechin (1)
(-)-Epigallocatechin 3-gallate 7-glucoside 4"-glucuronide (1)
(-)-Hygroline (1)
(-)-Jasmonic acid (1)
(-)-Menthone (1)
(-)-Menthyl acetate (1)
(-)-Sympatol (1)
(17alpha,23S)-17,23-Epoxy-29-hydroxy-27-norlanosta-1,8-diene-3,15,24-trione (1)
(1R,2R,3S,1'R)-Nepetalinic acid (1)
(1R,6R)-6-Hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate (1)

IsPrivate

False (1)

Modelling Approach

Ordinary differential equation model (1)

Study type

Transcription profiling by array (8)
RNA-seq of coding RNA (6)
ChIP-seq (1)
MicroRNA profiling by array (1)

Release Date

2025 (292)
2022 (258)
2024 (256)
2023 (251)
2021 (205)
2020 (147)
2019 (82)
2018 (76)
2017 (57)
2016 (53)
2026 (45)
2015 (39)
2014 (25)
2013 (20)
2012 (19)
2011 (15)
2009 (14)
2010 (9)
2008 (7)
2005 (2)
2007 (1)
2002 (1)

Lab affiliation

Department of Biochemistry and Molecular Biology, Capital Medical University, Beijing, 100069, China (2)
The First Affiliated Hospital, School of Medicine, Zhejiang University (2)
1) Department of Cancer Biology, Dana–Farber Cancer Institute, Boston, MA, USA. 2) Department of Cell Biology, Harvard Medical School, Boston, MA, USA. (1)
Capital Medical University (1)
Central Laboratory, Dongguan Binhaiwan Hospital, Guangdong Province, China (1)
Chinese Academy of Sciences Shanghai Institute of Materia Medica (1)
Department of Anesthesiology and Perioperative Medicine, Xijing Hospital,the Fourth Military Medical University, Xi'an 710032, China (1)
Department of Biology, University of Fribourg Chemin du Musée 10, 1700 Fribourg, Switzerland T +41 26 300 8631 F +41 26 300 9741 W http://www.unifr.ch/biology/research/dengjel/ (1)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02215, USA (1)
Department of Human Anatomy, Histology, and Embryology, Key Laboratory of Carcinogenesis and Translational Research (Ministry of Education) and State Key Laboratory of Natural and Biomimetic Drugs,Peking University Health Science Center, Beijing 100191, China. (1)
Guang'anmen Hospital of China Academy of Chinese Medical Sciences (1)
Hangzhou Normal University (1)
INSTITUTE OF ZOOLOGY, CHINESE ACADEMY OF SCIENCES (1)
Key Laboratory of Functional Protein Research of Guangdong Higher Education Institutes, Institute of Life and Health Engineering, College of Life Science and Technology, Jinan University, Guangzhou 510632, China (1)
Key Laboratory of Functional Protein Research of Guangdong Higher Education Institutes, Institute of life and Health Engineering, College of Life Science and Technology, Jinan University, Guangzhou 510632, China (1)
Key laboratory of functional protein research of guangdong higher education institutes, institute of life and health engineering, college of life science and technology, Jinan University, guangzhou 510632, China (1)
Proteomics & Metabolomics Facility MRC London Institute of Medical Sciences, Du Cane Road, London W12 0NN, United Kingdom (1)
School of Medicine, School of Life Sciences, Westlake University, Hangzhou, Zhejiang, China. (1)
Shenyang Agricultural University (1)
Tianjin Univerisity of Traditional Chinese Medicine (1)
Tianjin University of Traditional Chinese Medicine (1)
Westlake University (1)
Yangzhou University (1)
Zhejiang University,China (1)
the First Affiliated Hospital of Nanjing Medical University, Nanjing, 210029, China. (1)

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Qin-Qiao-Xiao-Du formula alleviate influenza virus infectious pneumonia through regulation gut microbiota and metabolomics.

Not available

S-EPMC9614278 | biostudies-literature

Shen-Bai-Jie-Du decoction suppresses the progression of colorectal adenoma to carcinoma through regulating gut microbiota and short-chain fatty acids.

Not available

S-EPMC11514841 | biostudies-literature

The splicing factor PRP31 is involved in transcriptional gene silencing and stress response in Arabidopsis

To study how PRP31, ZOP1 and STA1 affect gene expression and pre-mRNA splicing, we performed RNA deep sequencing for the seedlings materials C24, prp31, zop1, and sta1 mutants. Compare the mRNA profiles of 10-day old seedlings materials of mutants (prp31, zop1 and sta1) to wild type C24 by Illumina ...

ORGANISM(S): Arabidopsis thaliana

2015-03-02 | E-GEOD-63757 | biostudies-arrayexpress

Human liver cell line LO2 LC-MS/MS

A hyperlipidaemia model of L02 cells was established using free fatty acids (FFA, oleate and palmitate, 2:1; Sigma-Aldrich, USA) at a final concentration of 1 mM for 24 h. Cells were allowed to attach overnight prior to HTG-medicated serum for 24 h and then exposed to FFA during drug treatment. Afte...

ORGANISM(S): Homo sapiens (Human)

2024-01-26 | PXD045069 | Pride

Effect of probiotic Lactobacillus casei Zhang on liver gene expression of hypercholesterolemic rats

The hypocholesterolemic effect of probiotics has been observed, but the molecular mechanism of probiotic-host interaction is still obscure. In this study, DNA microarray technology was used to explore the gene expression profile of liver of hypercholesterolemic rats caused by administration of probi...

ORGANISM(S): Rattus norvegicus

2011-12-31 | E-GEOD-23740 | biostudies-arrayexpress

Design, synthesis, and LFA-1/ICAM-1 antagonist activity evaluation of Lifitegrast analogues.

Not available

S-EPMC8853157 | biostudies-literature

He-Jie-Shen-Shi Decoction as an Adjuvant Therapy on Severe Coronavirus Disease 2019: A Retrospective Cohort and Potential Mechanistic Study.

Not available

S-EPMC8250425 | biostudies-literature

Metabolic Responses of a Model Green Microalga Euglena gracilis to Different Environmental Stresses

Euglena gracilis, a green microalga known as a potential candidate for jet fuel producers and new functional food resources, is highly tolerant to antibiotics, heavy metals and other environmental stresses. Its cells contain many high-value products, including vitamins, amino acids, pigm...

2022-08-16 | MTBLS2878 | MetaboLights

Age-, sex- and proximal-distal-resolved multi-omics identifies regulators of intestinal aging in non-human primates.

The incidence of intestinal diseases increases with age, but the regulators of gut aging and the molecules linking gut aging and diseases remain largely unknown. By profiling the transcriptome, proteome, phosphoproteome and metabolome of 104 Macaca fascicularis large intestinal tissues, ...

2023-12-14 | MTBLS7612 | MetaboLights

Proteome-Wide Analyses Reveal Diverse Functions of Acylation Proteins in Neurospora crassa

Quantitative acetyl-proteomics, a newly identified post-translational modification, is known to regulate transcriptional activity in different organisms. Neurospora crassa is a model ascomycete fungus maintained for biochemistry and molecular biology research; however, extensive studies of the funct...

ORGANISM(S): Neurospora crassa

2021-01-26 | PXD022001 | Pride

Neurospora crassa quantitative acetyl-proteomics acetylated proteins protein-protein interaction

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