Duarte C C - OmicsDI

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Unknown (3926)
Transcriptomics (39)
Proteomics (30)
Genomics (14)
Metabolomics (9)
Models (2)

Organisms

Homo sapiens (41)
Mus musculus (13)
Rattus norvegicus (4)
Saccharomyces cerevisiae (2)
Phoneutria nigriventer (2)
Heliconius erato etylus x Heliconius himera (1)
Coffea (1)
Carassius auratus (1)
Linum usitatissimum (1)
Haemophilus influenzae (1)
Pseudomonas putida (1)
Escherichia coli (1)
Arabidopsis thaliana (1)
cellular organisms (1)
Homo (1)
Aspergillus niger (1)
Bos taurus (1)
Carica papaya (1)
Citrus sinensis (1)
Citrus x limon (1)
Pseudomonas aeruginosa PAK (1)
Pyrococcus furiosus (1)
Trichoplax sp. H2 (1)

Repository

biostudies-arrayexpress (43)
pride (25)
MetaboLights (9)
EGA (8)
MassIVE (4)
ENA (3)
BioModels (2)
jPOST (1)

Tissue

Cell culture (5)
Blood plasma (2)
Brain (2)
Epithelial cell (2)
Venom (2)
Aorta (1)
Cardiac muscle (1)
Colon (1)
Flower bud (1)
Kidney (1)
Natural killer cell (1)
Neuronal stem cell (1)
Permanent cell line cell (1)
Phloem (1)
Plant cell (1)
Stomach (1)
Subcutaneous adipose tissue (1)
Urine (1)

Disease

Brain glioblastoma multiforme (1)
COVID-19 (1)
Chikungunya (1)
Colon cancer (1)
Marfan syndrome (1)
Obesity (1)
Prostate cancer (1)
Severe acute respiratory syndrome (1)
Stomach cancer (1)

Technology Type

Mass Spectrometry (25)
Shotgun proteomics (13)
Bottom-up proteomics (8)
Mass spectrometry (7)
Gel-based experiment (4)
Data-dependent acquisition (3)
Data-independent acquisition (2)
Illumina HiSeq 2000 (1)
Mass spectrometry assay (1)
NMR spectroscopy assay (1)
Affinity purification coupled with mass spectrometry proteomics (1)
All-ion fragmentation (1)
HDMSE (1)
Top-down proteomics (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (3)
NextSeq 500 (2)
Q Exactive HF (2)
Liquid Chromatography MS - positive - reverse phase (2)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 4000 (1)
Orbitrap Fusion Lumos (1)
Q Exactive Plus (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - Alternating (LC-MS (Alternating)) (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Liquid Chromatography MS - negative - reverse-phase (1)
Liquid Chromatography MS - positive (1)
Nuclear Magnetic Resonance (NMR) - (1)

Publication Date

2014 (12)
2021 (9)
2016 (9)
2026 (7)
2025 (6)
2022 (6)
2020 (4)
2010 (4)
2023 (4)
2015 (3)
2013 (3)
2012 (3)
2011 (3)
2024 (3)
2019 (2)
2005 (1)
2009 (1)
2008 (1)
2006 (1)
2018 (1)
2017 (1)

CHEBI ID

CHEBI:10043 (1)
CHEBI:109146 (1)
CHEBI:109455 (1)
CHEBI:12962 (1)
CHEBI:131886 (1)
CHEBI:132459 (1)
CHEBI:132461 (1)
CHEBI:132599 (1)
CHEBI:134270 (1)
CHEBI:134271 (1)
CHEBI:134451 (1)
CHEBI:134457 (1)
CHEBI:134487 (1)
CHEBI:136273 (1)
CHEBI:137604 (1)
CHEBI:138535 (1)
CHEBI:138536 (1)
CHEBI:138577 (1)
CHEBI:143226 (1)
CHEBI:14336 (1)
CHEBI:143716 (1)
CHEBI:145243 (1)
CHEBI:145749 (1)
CHEBI:15318 (1)
CHEBI:15345 (1)
CHEBI:15346 (1)
CHEBI:15351 (1)
CHEBI:15354 (1)
CHEBI:15355 (1)
CHEBI:15356 (1)

Metabolite Name

(3S)-3-hydroxy-3-methylglutaryl-CoA (1)
(N(omega)-L-arginino)succinic acid (1)
(R)-3-(4-hydroxyphenyl)lactic acid (1)
12-ketolithocholic acid (1)
13-Methyltetradecanoic Acid (1)
1a-hydroxy-21-nor-20-oxavitamin D3 (1)
2'-deoxyadenosine 5'-monophosphate (1)
2'-deoxycytidine (1)
2'-deoxycytosine 5'-monophosphate (1)
2'-deoxyguanosine (1)
2'-deoxyguanosine 3'-monophosphate (1)
2'-deoxyuridine (1)
2,4-dihydroxy-7-methoxy-1,4-benzoxazin-3-one (DIMBOA) (1)
2-b-D-glucopyranosyloxy-4,7,8-trimethoxy-1,4-benzoxazin-3-one (HDM2BOA-glucoside) (1)
2-b-D-glucopyranosyloxy-4,7-dimethoxy-1,4-benzoxazin-3-one (HDMBOA-glucoside) (1)
2-b-D-glucopyranosyloxy-4-hydroxy-1,4-benzoxazin-3-one (DIBOA-glucoside) (1)
2-b-D-glucopyranosyloxy-4-hydroxy-7-methoxy-1,4-benzoxazin-3-one (DIMBOA-glucoside) (1)
2-b-D-glucopyranosyloxy-7-methoxy-1,4-benzoxazin-3-one (HMBOA-glucoside) (1)
2-hydroxyglutaric acid (1)
2-oxoadipic acid (1)
2-oxobutanoic acid (1)
2-oxosuccinamic acid (1)
3'-AMP (1)
3'-UMP (1)
3-O-Sulfogalactosylceramide (32:1) (1)
3-Oxoglutaric acid (1)
3-hydroxy-2-methylpropanoyl-CoA (1)
3-oxochenodeoxycholic acid (1)
3-phosphoglyceric acid (1)
3-phosphonatooxypyruvate (1)

IsPrivate

False (2)

Model Flag

Non Kinetic (2)

First Public Date

2023 (1)
2019 (1)
2014 (1)

Modelling Approach

Constraint-based model (1)

Modification

Not available (1)

Study type

Transcription profiling by array (24)
RNA-seq of coding RNA (7)
ChIP-seq (3)
Transcription profiling by tiling array (2)
Unknown experiment type (1)
ChIP-chip by tiling array (1)
Animal - Single-cell sequencing (1)
Human - High-throughput sequencing (1)
Animal - High-throughput sequencing (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (476)
2021 (449)
2025 (437)
2023 (427)
2024 (383)
2020 (339)
2019 (246)
2018 (216)
2017 (168)
2016 (163)
2015 (142)
2014 (119)
2012 (85)
2013 (83)
2026 (67)
2010 (48)
2011 (47)
2009 (23)
2008 (19)
2007 (9)
2005 (7)
2006 (6)
2002 (3)
2003 (2)
2004 (1)
2001 (1)
2000 (1)
1998 (1)
1997 (1)

Lab affiliation

Analytical Biochemistry and Proteomics Unit (1)
Associate professor at University of Campinas-SP (UNICAMP-SP) (1)
CRG/UPF Proteomics Unit (1)
Cardiovascular Proteomics Laboratory Centro Nacional de Investigaciones Cardiovasculares (CNIC) Madrid, Spain (1)
Department of Basic and Clinical Neuroscience, The Maurice Wohl Clinical Neuroscience Institute, Institute of Psychiatry, Psychology, & Neuroscience, King’s College London, London, UK (1)
Department of Cancer Genetics and Epigenetics, Beckman Research Institute, City of Hope Medical Center, Duarte, CA 91010, USA (1)
Department of Medical Sciences iBiMED University of Aveiro (1)
Department of Oncology / University of Oxford (1)
Departments of Cancer Genetics and Epigenetics Beckman Research Institute, City of Hope, Duarte, CA 91007, USA (1)
Departments of Pediatrics and Immuno-Oncology, Beckman Research Institute, City of Hope National Medical Center, Duarte CA 91010 (1)
Early Detection and Prevention, Translational Genomics Research Institute, Phoenix, AZ  Integrated Mass Spectrometry Shared Resource, City of Hope Comprehensive Cancer Center, Duarte, CA  (lab head) (1)
Experimental and Clinical Research Center, a cooperation between Max Delbrück Center for Molecular Medicine in the Helmholtz Association and Charité Universitätsmedizin Berlin, Berlin, Germany. Humboldt-Universität zu Berlin, Faculty of Life Sciences Berlin, Germany Berlin Institute of Health (BIH), Center for Regenerative Therapies, Berlin, Germany (1)
Fungal Physiology, CBS-KNAW Fungal Biodiversity Centre Institute of the Royal Netherlands Academy of Arts and Sciences(KNAW) Fungal Molecular Physiology, Utrecht University, The Netherlands (1)
Institut für Experimentelle Medizin (IEM) Arbeitsgruppe Systematische Proteomforschung Christian-Albrechts-Universität zu Kiel Kiel, Germany (1)
Institute for Molecular Bioscience, The University of Queensland, St Lucia, Queensland 4122, Australia (1)
Institute for Research and Innovation in Health, University of Porto, Porto, Portugal; Institute of Molecular Pathology and Immunology of the University of Porto, Porto, Portugal; Institute for Biomedical Sciences Abel Salazar of the University of Porto, Porto, Portugal; Faculty of Medicine of the University of Porto, Porto, Portugal. (1)
Institute for Research and Innovation in Health, University of Porto, Porto, Portugal; Institute of Molecular Pathology and Immunology of the University of Porto, Porto, Portugal; Institute for Biomedical Sciences Abel Salazar of the University of Porto, Porto, Portugal; Faculty of Medicine of the University of Porto, Porto, Portugal. (lab head) (1)
Lab's head (1)
Laboratorio de Proteomica e Aracnídeos, Diretoria de Pesquisa e Desenvolvimento, Fundação Ezequiel Dias - FUNED, Belo Horizonte, MG - Brazil (1)
Laboratório de Melhoramento Genético Vegetal, Centro de Ciências e Tecnologias Agropecuárias (CCTA), Universidade Estadual do Norte Fluminense Darcy Ribeiro (UENF), Av. Alberto Lamego, Campos dos Goytacazes, RJ, Brazil. (1)
Laboratório de Virologia, Faculdade de ciências e tecnologias, Universidade do Algarve, Portugal (1)
Luxembourg instititute of health (1)
Norwegian University of Life Sciences (1)
Pharmacology Department, Biomedical Science Institute, University of Sao Paulo, Sao Paulo, Brazil (1)
Professor of Biochemistry Chair of the Dept. of Biochemistry and Tissue Biology Head of the Laboratory of Neuroproteomics University of Campinas (UNICAMP), Brazil. (1)

Tags

xref:PubMed:21778360 (1)
xref:EuropePMC:PMC10475052 (1)

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Transcription profiling by array of human vitamin C-induced gene expression in GM5659 skin fibroblasts

The skin is a protective barrier against external insults and any lesion must be rapidly and efficiently repaired. Dermal fibroblasts are the major source of extracellular connective tissue matrix and play an important role in wound healing. Vitamin C is an important water-soluble free radical scave...

ORGANISM(S): Homo sapiens

2009-02-21 | E-GEOD-11919 | biostudies-arrayexpress

Ovarian function in Duarte galactosemia.

Not available

S-EPMC3773175 | biostudies-literature

Tiling microarray expression analysis of Heliconius butterfly pupal forewing sections across the genomic interval controlling red color pattern

We investigated gene expression levels in Heliconius erato butterflies with divergent wing patterns across a 656KB genomic interval linked to the red color pattern wing polymorphism. This included comparison of expression between two H. erato color pattern populations (H. e. petiverana and a H.e. et...

ORGANISM(S): Heliconius erato etylus x Heliconius himera

2011-12-02 | E-GEOD-30221 | biostudies-arrayexpress

Molecular analysis of GALT gene in Argentinian population: Correlation with enzyme activity and characterization of a novel Duarte-like allele.

Not available

S-EPMC7733017 | biostudies-literature

Duarte2004 - Genome-scale metabolic network of Saccharomyces cerevisiae (iND750)

Duarte2004 - Genome-scale metabolic network of Saccharomyces cerevisiae (iND750) This model is described in the article: Reconstruction and validation of Saccharomyces cerevisiae iND750, a fully compartmentalized genome-scale metabolic model. Duarte NC, Herrgård MJ, Palsson ...

2015-07-30 | MODEL1507180019 | BioModels

Stabilization of the c-Myc Protein by CAMKIIγ Promotes T Cell Lymphoma.

Not available

S-EPMC5552197 | biostudies-literature

Hepatitis C Virus Protease Inhibitors Show Differential Efficacy and Interactions with Remdesivir for Treatment of SARS-CoV-2 In Vitro.

Not available

S-EPMC8370243 | biostudies-literature

Haplotype analyses of the c.1027C>T and c.2167_2168delAT recurrent truncating mutations in the breast cancer-predisposing gene PALB2.

Not available

S-EPMC5551669 | biostudies-literature

C-NHEJ without indels is robust and requires synergistic function of distinct XLF domains.

Not available