Duarte I I - OmicsDI

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Unknown (2450)
Transcriptomics (27)
Proteomics (13)
Metabolomics (7)
Genomics (3)
Models (1)

Organisms

Homo sapiens (16)
Mus musculus (9)
Rattus norvegicus (4)
Heliconius erato etylus x Heliconius himera (1)
Carassius auratus (1)
Linum usitatissimum (1)
Haemophilus influenzae (1)
Pseudomonas putida (1)
Escherichia coli (1)
Gallus gallus (1)
Saccharomyces cerevisiae (1)
cellular organisms (1)
Homo (1)
Aspergillus niger (1)
Carica papaya (1)
Citrus sinensis (1)
Citrus x limon (1)
Phoneutria nigriventer (1)
Trichoplax sp. H2 (1)

Repository

biostudies-arrayexpress (31)
pride (10)
MetaboLights (7)
MassIVE (2)
BioModels (1)
jPOST (1)

Tissue

Aorta (1)
Cardiac muscle (1)
Flower bud (1)
Hepatocyte (1)
Phloem (1)
Plant cell (1)
Urine (1)
Venom (1)

Disease

Hepatocellular carcinoma (1)
Marfan syndrome (1)
Prostate cancer (1)

Technology Type

Mass Spectrometry (10)
Mass spectrometry (6)
Bottom-up proteomics (5)
Shotgun proteomics (4)
Data-dependent acquisition (2)
Gel-based experiment (2)
Mass spectrometry assay (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Data-independent acquisition (1)
HDMSE (1)
Top-down proteomics (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - positive - reverse phase (2)
Illumina HiSeq 2000 (1)
NextSeq 500 (1)
Orbitrap Fusion Lumos (1)
Q Exactive Plus (1)
Liquid Chromatography MS - Alternating (LC-MS (Alternating)) (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Liquid Chromatography MS - negative - reverse-phase (1)
Liquid Chromatography MS - positive (1)

Publication Date

2014 (9)
2016 (8)
2021 (5)
2026 (4)
2012 (3)
2023 (3)
2015 (2)
2013 (2)
2010 (2)
2024 (2)
2019 (2)
2025 (2)
2022 (2)
2005 (1)
2011 (1)
2009 (1)
2008 (1)
2006 (1)
2020 (1)

CHEBI ID

CHEBI:10043 (1)
CHEBI:109146 (1)
CHEBI:109455 (1)
CHEBI:12962 (1)
CHEBI:131886 (1)
CHEBI:132459 (1)
CHEBI:132461 (1)
CHEBI:132599 (1)
CHEBI:134270 (1)
CHEBI:134271 (1)
CHEBI:134451 (1)
CHEBI:134457 (1)
CHEBI:134487 (1)
CHEBI:136273 (1)
CHEBI:137604 (1)
CHEBI:138535 (1)
CHEBI:138536 (1)
CHEBI:138577 (1)
CHEBI:143226 (1)
CHEBI:14336 (1)
CHEBI:143716 (1)
CHEBI:145749 (1)
CHEBI:15318 (1)
CHEBI:15345 (1)
CHEBI:15346 (1)
CHEBI:15351 (1)
CHEBI:15354 (1)
CHEBI:15355 (1)
CHEBI:15356 (1)
CHEBI:15380 (1)

Metabolite Name

(3S)-3-hydroxy-3-methylglutaryl-CoA (1)
(N(omega)-L-arginino)succinic acid (1)
(R)-3-(4-hydroxyphenyl)lactic acid (1)
12-ketolithocholic acid (1)
13-Methyltetradecanoic Acid (1)
2'-deoxyadenosine 5'-monophosphate (1)
2'-deoxycytidine (1)
2'-deoxycytosine 5'-monophosphate (1)
2'-deoxyguanosine (1)
2'-deoxyguanosine 3'-monophosphate (1)
2'-deoxyuridine (1)
2,4-dihydroxy-7-methoxy-1,4-benzoxazin-3-one (DIMBOA) (1)
2-b-D-glucopyranosyloxy-4,7,8-trimethoxy-1,4-benzoxazin-3-one (HDM2BOA-glucoside) (1)
2-b-D-glucopyranosyloxy-4,7-dimethoxy-1,4-benzoxazin-3-one (HDMBOA-glucoside) (1)
2-b-D-glucopyranosyloxy-4-hydroxy-1,4-benzoxazin-3-one (DIBOA-glucoside) (1)
2-b-D-glucopyranosyloxy-4-hydroxy-7-methoxy-1,4-benzoxazin-3-one (DIMBOA-glucoside) (1)
2-b-D-glucopyranosyloxy-7-methoxy-1,4-benzoxazin-3-one (HMBOA-glucoside) (1)
2-hydroxyglutaric acid (1)
2-oxoadipic acid (1)
2-oxobutanoic acid (1)
2-oxosuccinamic acid (1)
3'-AMP (1)
3'-UMP (1)
3-Oxoglutaric acid (1)
3-hydroxy-2-methylpropanoyl-CoA (1)
3-phosphoglyceric acid (1)
3-phosphonatooxypyruvate (1)
4-hydroxyproline (1)
5'-S-methyl-5'-thioadenosine (1)
5'-deoxyadenosine (1)

IsPrivate

False (1)

Model Flag

Non Kinetic (1)

Modification

Not available (1)

Study type

Transcription profiling by array (18)
RNA-seq of coding RNA (4)
ChIP-seq (3)
Transcription profiling by tiling array (2)
ChIP-chip by tiling array (1)
Animal - Single-cell sequencing (1)
MicroRNA profiling by high throughput sequencing (1)

Release Date

2022 (331)
2023 (303)
2025 (276)
2021 (268)
2020 (237)
2024 (235)
2019 (163)
2018 (119)
2016 (99)
2014 (77)
2017 (77)
2015 (60)
2012 (50)
2026 (44)
2013 (35)
2010 (26)
2011 (25)
2009 (19)
2008 (11)
2006 (6)
2003 (5)
2004 (4)
2007 (3)
2002 (3)
2001 (2)
2005 (1)
2000 (1)
1998 (1)

Lab affiliation

CRG/UPF Proteomics Unit (1)
Cardiovascular Proteomics Laboratory Centro Nacional de Investigaciones Cardiovasculares (CNIC) Madrid, Spain (1)
Department of Diabetes Complications and Metabolism, Beckman Research Institute, City of Hope, Duarte, CA 91010 (1)
Department of Medical Sciences iBiMED University of Aveiro (1)
Department of Oncology / University of Oxford (1)
Fungal Physiology, CBS-KNAW Fungal Biodiversity Centre Institute of the Royal Netherlands Academy of Arts and Sciences(KNAW) Fungal Molecular Physiology, Utrecht University, The Netherlands (1)
Institut für Experimentelle Medizin (IEM) Arbeitsgruppe Systematische Proteomforschung Christian-Albrechts-Universität zu Kiel Kiel, Germany (1)
Institute for Molecular Bioscience, The University of Queensland, St Lucia, Queensland 4122, Australia (1)
Laboratório de Melhoramento Genético Vegetal, Centro de Ciências e Tecnologias Agropecuárias (CCTA), Universidade Estadual do Norte Fluminense Darcy Ribeiro (UENF), Av. Alberto Lamego, Campos dos Goytacazes, RJ, Brazil. (1)
Laboratório de Virologia, Faculdade de ciências e tecnologias, Universidade do Algarve, Portugal (1)

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Insights into Metabolic Changes Caused by the Trichoderma virens-Maize Root Interaction

The interactions of crops with root-colonizing endophytic microorganisms are highly relevant to agriculture, because endophytes can modify plant resistance to pests and increase crop yields. We investigated the interactions between the host plant Zea mays and the endophytic fungus Trichode...

2021-07-08 | MTBLS1964 | MetaboLights

Characterisation of CDIN1 and Codanin-1 interaction by affinity purification mass spectrometry analysis

Congenital Dyserythropoietic Anaemia type I (CDA-I) is a rare inherited disorder of erythropoiesis, in which erythroid cells display a unique nuclear phenotype referred to as ‘spongy’ heterochromatin. The molecular basis of CDA-I remains unknown, with most cases of CDA-I caused by mutations in CDAN1...

ORGANISM(S): Homo sapiens (Human)

2026-09-14 | PXD078989 | Pride

Congenital dyserythropoietic anaemia type i (cda-i) Erythropoiesis

Molecular analysis of GALT gene in Argentinian population: Correlation with enzyme activity and characterization of a novel Duarte-like allele.

Not available

S-EPMC7733017 | biostudies-literature

A three-dimensional topology of complex I inferred from evolutionary correlations.

Not available

S-EPMC3436739 | biostudies-literature

Tiling microarray expression analysis of Heliconius butterfly pupal forewing sections across the genomic interval controlling red color pattern

We investigated gene expression levels in Heliconius erato butterflies with divergent wing patterns across a 656KB genomic interval linked to the red color pattern wing polymorphism. This included comparison of expression between two H. erato color pattern populations (H. e. petiverana and a H.e. et...

ORGANISM(S): Heliconius erato etylus x Heliconius himera

2011-12-02 | E-GEOD-30221 | biostudies-arrayexpress

Clinical and biochemical phenotypes, genotypes, and long-term outcomes of individuals with galactosemia type I from a single metabolic genetics center in Alberta.

Not available

S-EPMC10926219 | biostudies-literature

Structure-function relationship in a variant hemoglobin: a combined computational-experimental approach.

Not available

S-EPMC1614504 | biostudies-literature

HTT, ATXN1 and ATXN2 CAG triplet repeat sizes: exploring their role in the disease risk and cancer comorbidity in Parkinson's disease.

Not available

S-EPMC11837329 | biostudies-literature

Mass Spectrometry Defines Lysophospholipids as Ligands for Chicken MHCY Class I Molecules.