Dubois N N - OmicsDI

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Unknown (1015)
Transcriptomics (50)
Proteomics (42)
Genomics (14)
Metabolomics (10)

Organisms

Schizophyllum commune H4-8 (39)
Mycobacterium tuberculosis SP7 (39)
Mycobacterium tuberculosis SP10 (39)
Mycobacterium tuberculosis SP13 (39)
Mycobacterium tuberculosis SP22 (39)
Chlamydomonas reinhardtii (39)
Enterococcus mundtii CRL35 (39)
Oncorhynchus tshawytscha (39)
Pseudomonas canadensis (39)
Influenza A virus (A/California/04/2009(H1N1)) (39)
Pseudomonas aeruginosa PAO1H2O (39)
Human alphaherpesvirus 1 strain 17 (39)
Mycobacterium tuberculosis SP1 (39)
Marchantia polymorpha subsp. ruderalis (39)
Methylocystis sp. (39)
Exiguobacterium sp. SH31 (39)
Palaemonetes sp. common grass shrimp associated circular virus (39)
Mus musculus (27)
Homo sapiens (19)
Arabidopsis thaliana (7)
Helicobacter pylori (2)
Rattus norvegicus (2)
Mesorhizobium metallidurans STM 2683 (1)
Bacillus thuringiensis Bt407 (1)
Bacillus thuringiensis (1)
Macaca mulatta (1)
Apis mellifera (1)
Triticum aestivum (1)
Saccharomyces cerevisiae (1)
Drosophila melanogaster (1)

Repository

biostudies-arrayexpress (55)
pride (39)
MetaboLights (10)
EGA (9)
MassIVE (2)
jPOST (1)

Tissue

Cell culture (6)
Epithelial cell (4)
B cell (3)
Liver (3)
Hepatic stellate cell (2)
Head (2)
Bronchial epithelial cell (2)
Root (2)
Fibroblast (2)
Colon (2)
Brain (2)
Embryonic stem cell (2)
Leaf (2)
Endothelial cell (1)
Bronchus smooth muscle (1)
Primary cell (1)
Permanent cell line cell (1)
Blood cell (1)
Skin (1)
Cell suspension culture (1)
Plant cell (1)
Whole body (1)

Disease

Optic atrophy 1 (2)
Lymphoma (2)
Osteosarcoma (2)
Colon cancer (2)
Familial hyperlipidemia (1)
Chronic lymphocytic leukemia (1)
Liver disease (1)
Alzheimer's disease (1)
Cardiovascular system disease (1)
Cervix carcinoma (1)
Disease free (1)

Technology Type

Mass Spectrometry (39)
Shotgun proteomics (24)
Affinity purification coupled with mass spectrometry proteomics (10)
Mass spectrometry (8)
Bottom-up proteomics (8)
Data-dependent acquisition (4)
Mass spectrometry assay (2)
Gel-based experiment (2)
Illumina (various), Illumina (Various) (1)
Proteogenomics (1)
Top-down proteomics (1)

Instrument Platform

Liquid Chromatography MS - alternating - reverse phase (4)
Liquid Chromatography MS - positive - reverse phase (4)
Liquid Chromatography MS - negative - reverse phase (3)
Illumina HiSeq 2500 (2)
BGIseq500 (1)
Hybridized arrays (1)
Total RNA from honey bee brains (1)
Labeled RNA (1)
Honey bee (Apis mellifera) colony. (1)
Brains of infected and control honey bees (1)
White-eye pupae, purified DWV particles (1)
White eye pupae without manipulation. (1)
BGISEQ-500 (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 4000 (1)
NextSeq 500 (1)
SolariX (1)
Q Exactive HF-X (1)
Q Exactive (1)
Liquid Chromatography MS - alternating - reverse-phase (1)
Liquid Chromatography MS - alternating - hilic (1)
Gas Chromatography MS - positive (1)

Publication Date

2017 (11)
2023 (11)
2015 (10)
2014 (8)
2012 (8)
2021 (7)
2022 (7)
2016 (5)
2010 (5)
2026 (5)
2025 (5)
2024 (4)
2020 (4)
2019 (4)
2013 (4)
2006 (3)
2018 (3)
2011 (1)
2009 (1)
2007 (1)

CHEBI ID

CHEBI:16704 (6)
CHEBI:17562 (6)
CHEBI:16750 (5)
CHEBI:17802 (4)
CHEBI:16020 (4)
CHEBI:15891 (4)
CHEBI:15428 (4)
CHEBI:17596 (4)
CHEBI:16335 (4)
CHEBI:72426 (3)
CHEBI:85853 (3)
CHEBI:65302 (3)
CHEBI:19227 (3)
CHEBI:66857 (3)
CHEBI:64516 (3)
CHEBI:64517 (3)
CHEBI:66849 (3)
CHEBI:66850 (3)
CHEBI:18344 (3)
CHEBI:16450 (3)
CHEBI:17775 (3)
CHEBI:17748 (3)
CHEBI:15698 (3)
CHEBI:18211 (3)
CHEBI:16411 (3)
CHEBI:16765 (3)
CHEBI:16811 (3)
CHEBI:16610 (3)
CHEBI:24898 (3)
CHEBI:26986 (3)

Metabolite Name

Cytidine (4)
Uridine (4)
N1-Methyl-2-pyridone-5-carboxamide (3)
2'-O-methyluridine (3)
1-methyladenosine (3)
Kynurenic acid (3)
Inosine (3)
N-AcetylProline (2)
Indole-3-carboxyaldehyde (2)
2-methylguanosine (2)
1-methylinosine (2)
2-methyladenosine (2)
8-methyladenosine (2)
6-methyladenosine (2)
3-methylpseudouridine (2)
1-methylpseudouridine (2)
4-methylcytidine (2)
Hexose (2)
3-methyluridine (2)
7-methylguanosine (2)
2'-O-methylinosine (2)
5-methylcytidine (2)
5-methyluridine (2)
P-cresol sulfate (2)
N-acetylcitrulline (2)
Acetylcarnitine (2)
2'-deoxycytidine (2)
5-Methylcytidine (2)
Indole-3-propionic acid (2)
Deoxyuridine (2)

Study type

Transcription profiling by array (25)
RNA-seq of coding RNA (10)
Comparative genomic hybridization by array (5)
ChIP-seq (5)
ChIP-chip by tiling array (3)
Other (2)
RNA-seq of non coding RNA (2)
Unknown experiment type (1)
High-throughput sequencing (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2022 (118)
2021 (98)
2020 (93)
2024 (89)
2025 (87)
2019 (84)
2023 (79)
2018 (72)
2017 (56)
2015 (51)
2016 (48)
2014 (38)
2013 (34)
2012 (32)
2011 (22)
2010 (22)
2026 (15)
2009 (14)
2008 (5)
2007 (4)
2006 (4)
2004 (2)
2003 (1)
2002 (1)
2000 (1)

Lab affiliation

Univ. Bordeaux, INSERM, CRCTB, U 1045, F-33000 Bordeaux, France (3)
Lecturer/Associate Professor, School of Biomolecular and Biomedical Science, UCD Conway Institute, University College Dublin, Belfield, Dublin 4, Ireland (2)
Division of Molecular Genetics, German Cancer Research Center (DKFZ), Heidelberg, Germany (2)
Université libre de Buxelles (ULB), Laboratory of Stem Cells and Cancer, 808 route de Lennik, 1070 Brussels, Belgium ; WELBIO, Université Libre de Bruxelles (ULB), 1070 Bruxelles, Belgium (2)
Department of Microbiology & Molecular Medicine and Geneva Center for Inflammation Research (GCIR), Faculty of Medicine, University of Geneva, Rue Michel Servet 1, 1211 Genève 4, Switzerland. (1)
Stem Cell and Developmental Biology, Laboratory of Stem Cells and Cancer, Université Libre de Bruxelles (ULB), Bruxelles, Belgium (1)
IBBME, Stem Cell Bioengineering, University of Toronto, Canada (1)
Institut de biologie moléculaire des plantes, CNRS, Université de Strasbourg, Strasbourg, France (1)
Institute of Molecular Biology (IMB), Mainz 55128, Germany (1)
Global Health Institute EPFL Switzerland (1)
Florey Institute (1)
Biomic Team, Environmental Technologies Department, Irstea, France (1)
Department of Immunology, Genetics & Pathology, Science for Life Laboratory, Uppsala University, Uppsala, Sweden. (1)
Laboratoire de Spectrométrie de Masse Bio-Organique Département des Sciences Analytiques, Institut Pluridisciplinaire Hubert Curien, UMR 7178 (CNRS-UdS) ECPM, Bat. R5-N0, 25 rue Becquerel F67087-Strasbourg-Cedex 2 (1)
CSO, Bioaster, France (1)
Department of Immunology and Cell Biology, Faculty of Medicine and Health Sciences, Université de Sherbrooke (1)
Marseille Proteomics, Inserm UMR1068, CNRS UMR7258, Aix Marseille Université U105, Institut Paoli Calmettes (1)
Université de Sherbrooke (1)
Department of Anatomy and Cell Biology Faculty of Medicine and Health Science Université de Sherbrooke (1)
Anatomy and Cell Biology, University of Sherbrooke, Canada (1)
Anonymous for double-blind review. (1)
Ghent University, Department of Plant Biotechnology and Bioinformatics, 9052 Ghent, Belgium VIB Center for Plant Systems Biology, 9052 Ghent, Belgium (1)
Laboratory of Tropical Crop Improvement, Division of Crop Biotechnics, KU Leuven, B-3001, Leuven, Belgium FAcility for System Biology based Mass Spectrometry (SYBIOMA), KU Leuven, B-3001, Leuven, Belgium (1)
(1) Laboratory of Angiogenesis and Vascular Metabolism, Vesalius Research Center, Department of Oncology, University of Leuven, Leuven, B-3000, Belgium; (2) Laboratory of Angiogenesis and Vascular Metabolism, Vesalius Research Center, VIB, Leuven, B-3000, Belgium (1)
Department of Anatomy and Cell Biology, Faculty of Medecine and Health Sciences, Université de Sherbrooke (1)
Institute for Diabetes and Obesity, Helmholtz Zentrum München, 85764 Neuherberg, Germany German Center for Diabetes Research, Neuherberg, Germany (1)
Miniaturization for Synthesis, Analysis & Proteomics, UAR 3290, CNRS, University of Lille, 59655 Villeneuve d’Ascq Cedex, France (1)
UMR5240 - Microbiologie, Adaptation et Pathogénie. CNRS / UCBL / INSA / Campus de la Doua - 10 Rue Dubois 69622 Villeurbanne, FRANCE (1)
Department of Anatomy and Cell Biology, Université de Sherbrooke (1)
National Institute of Arthritis and Musculoskeletal and Skin Diseases, National Institutes of Health, Bethesda, MD, USA (1)

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Cardiac Mean Electrical Axis in Thoroughbreds-Standardization by the Dubois Lead Positioning System.

Not available

S-EPMC5241011 | biostudies-literature

Myocardial Gene Expression Profiling to Predict and Identify Cardiac Allograft Acute Cellular Rejection

Aims. Serial invasive endomyocardial biopsies (EMB) remain the gold standard for acute cellular rejection (ACR) diagnosis. However histological grading has several limitations. We aimed to explore the value of myocardial Gene Expression Profiling (GEP) for diagnosing and identifying predictive bioma...

ORGANISM(S): Homo sapiens

2017-03-07 | E-MTAB-5136 | biostudies-arrayexpress

Phylogeny and systematics of the Proterodiplostomidae Dubois, 1936 (Digenea: Diplostomoidea) reflect the complex evolutionary history of the ancient digenean group.

Not available

S-EPMC7434846 | biostudies-literature

A/T/N: An unbiased descriptive classification scheme for Alzheimer disease biomarkers.

Not available

S-EPMC4970664 | biostudies-literature

Transcriptional response to nitrogen availability in yeast

We used cDNA microarray technology to compare the genome-wide expression profiles of a wild type strain (BY4700) (E02, E04, E06) or the isogenic strain deleted of GLN3 and GAT1 genes (E01, E03, E05) grown in YNB medium with glutamine as nitrogen source (M.Gln) against the wild type strain grown in M...

ORGANISM(S): Saccharomyces cerevisiae

2010-07-01 | E-GEOD-2891 | biostudies-arrayexpress

A new family Lepidocharontidae with description of Lepidocharon gen. n., from the Great Barrier Reef, Australia, and redefinition of the Microparasellidae (Isopoda, Asellota).

Not available

S-EPMC4926698 | biostudies-literature

Canadian federal penitentiaries as obesogenic environments: a retrospective cohort study.

Not available

S-EPMC6182125 | biostudies-literature

Evaluation of person-level heterogeneity of treatment effects in published multiperson N-of-1 studies: systematic review and reanalysis.

Not available

S-EPMC5988083 | biostudies-literature

Transcription profiling of rat kidney samples following treatment with the corticosteroid methylprednisolone over several time intervals

Summary: To identify distinct temporal patterns of mRNA expression in the kidney of rats following a bolus dose of the corticosteroid methylprednisolone. Hypothesis: That prednisone pharmacodynamics can be derived from expression profiling data.

ORGANISM(S): Rattus norvegicus

2007-09-13 | E-GEOD-1721 | biostudies-arrayexpress

O-GlcNAcylation controls pro-fibrotic transcriptional regulatory signaling in hepatic stellate cells

Liver injury causes “transdifferentiation” of quiescent hepatic stellate cells (Q-HSCs) into wound repairing myofibroblasts (MF-HSCs), whose uncontrolled activation leads ultimately to liver fibrosis. Although this process is triggered by deep metabolic and transcriptional reprogramming, functional ...

ORGANISM(S): Homo sapiens (Human)

2024-05-21 | PXD045860 | Pride

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