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TranscriptomicsAnnotating Low Abundance and Transient RNAs in Yeast using Ultra High-throughput Sequencing
Annotating Low Abundance and Transient RNAs in Yeast using Tiling Microarrays and Ultra High-throughput Sequencing Reveals New Transcripts that are not Conserved Across Closely Related Yeast Species A complete description of the transcriptome of an organism is crucial for a comprehensive understand...
ORGANISM(S): Saccharomyces cerevisiae 
2008-12-18 | E-GEOD-11801 | biostudies-arrayexpress
UnknownResampling-based empirical Bayes multiple testing procedures for controlling generalized tail probability and expected value error rates: focus on the false discovery rate and simulation study.
Not available
S-EPMC4130579 | biostudies-literature
TranscriptomicsTranscription profiling of human fibroblasts to examine diversity, topographic differentiation and positional memory
Diversity, Topographic Differentiation, and Positional Memory in Human Fibroblasts Howard Y. Chang, Jen-Tsan Chi, Sandrine Dudoit, Chanda Bondre, Matt van de Rijn, David Botstein, and Patrick O. Brown A fundamental feature of the architecture and functional design of vertebrate animals is a stroma...
ORGANISM(S): Homo sapiens 
2005-09-27 | E-SMDB-1507 | biostudies-arrayexpress
UnknownA general and flexible method for signal extraction from single-cell RNA-seq data.
Not available
S-EPMC5773593 | biostudies-literature
UnknownSlingshot: cell lineage and pseudotime inference for single-cell transcriptomics.
Not available
S-EPMC6007078 | biostudies-literature
UnknownTrajectory-based differential expression analysis for single-cell sequencing data.
Not available
S-EPMC7058077 | biostudies-literature
TranscriptomicsGene expression profiling of individual human oocytes and embryos
Early development in humans is characterised by low and variable embryonic viability, reflected in low fecundity and high rates of miscarriage, relative to other mammals. Data from assisted reproduction programmes provides additional evidence that this is largely mediated at the level of embryonic ...
ORGANISM(S): Homo sapiens 
2013-12-13 | E-MEXP-3870 | biostudies-arrayexpress
TranscriptomicsmodENCODE Drosophila RNA Binding Protein RNAi RNA-Seq Studies
Deep Sequencing of mRNA from the Drosophila melanogaster S2-DRSC cells that have been RNAi depleted of mRNAs encoding RNA binding proteins. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFina...
ORGANISM(S): Drosophila melanogaster 
2009-10-09 | E-GEOD-18508 | biostudies-arrayexpress
TranscriptomicsZebularine effect on mouse embryonic stem cells manifested as cardiod-myogenic potential: testable hypothesis generation using microarray data
Lineage commitment during Embryonic Stem Cells (ESCs) differentiation is controlled not only by a gamut of transcription factors but also by epigenetic events, mainly histone deacetylation and promoter DNA methylation. Moreover, the DNA demethylation agent 5′-Aza-2′-deoxycytidine (AzadC) has been wi...
ORGANISM(S): Mus musculus 
2011-05-05 | E-GEOD-29072 | biostudies-arrayexpress
TranscriptomicsSilencing of odorant receptor gene expression by G protein M-NM-2M-NM-3 signaling ensures the expression of one odorant receptor per olfactory sensory neuron
Olfactory sensory neurons express just one out of a possible ~1000 odorant receptor genes, reflecting an exquisite mode of gene regulation. In one model, once an odorant receptor is chosen for expression, other receptor genes are suppressed by a negative feedback mechanism, ensuring a stable functio...
ORGANISM(S): Danio rerio 
2013-12-16 | E-GEOD-53334 | biostudies-arrayexpress
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