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UnknownOn the necessity of different statistical treatment for Illumina BeadChip and Affymetrix GeneChip data and its significance for biological interpretation.
Not available
S-EPMC2453111 | biostudies-literature
TranscriptomicsTranscription profiling by array of Arabidopsis plants after innoculation with isogenic Pseudomonas syringaie strains expressing one of four different avr genes
Gene expression profiles of a single Arabidopsis genotype (Col-0) in response to isogenic Pseudomonas syringae strains expressing one of four different cloned avr genes was studied (avrRpt2, avrRpm1, avrPphB, avrRps4; responses mediated by the R genes RPS2, RPM1, RPS5 and RPS4 ).
ORGANISM(S): Arabidopsis thaliana 
2008-02-29 | E-MEXP-1480 | biostudies-arrayexpress
TranscriptomicsMicroRNA expression profiling of human breast cancer identifies new markers of tumour subtype
MicroRNAs (miRNAs), a class of short non-coding RNAs, often act post-transcriptionally to inhibit gene expression. We used a bead-based flow cytometric profiling method to obtain miRNA expression data for 93 primary human breast tumours, 21 cell lines and five normal breast samples. Of 309 human miR...
ORGANISM(S): Homo sapiens 
2007-10-09 | E-GEOD-7842 | biostudies-arrayexpress
Transcriptomics5-hydroxymethylcytosine marks promoters in colon that resist hypermethylation in cancer [Methylation27 Array]
The discovery of cytosine hydroxymethylation (5-hmC) as a mechanism that potentially controls DNA methylation changes typical of neoplasia prompted us to investigate its behavior in colon cancer. 5-hmC is globally reduced in proliferating cells such as colon tumors and the gut crypt progenitors, fro...
ORGANISM(S): Homo sapiens 
2015-02-03 | E-GEOD-47071 | biostudies-arrayexpress
UnknownA role for XRCC2 gene polymorphisms in breast cancer risk and survival.
Not available
S-EPMC3932658 | biostudies-literature
TranscriptomicsA novel recurrent mutation in MITF predisposes to familial and sporadic melanoma
We identified a novel germline mutation of the microphthalmia-associated transcription factor (MITF - E318K). This mutation was found to be present in numerous melanoma families, as well as the general population, where its association with melanoma has a significant effect. We determined the effe...
ORGANISM(S): Homo sapiens 
2011-12-01 | E-GEOD-31269 | biostudies-arrayexpress
GenomicsICGC Oesophageal Adenocarcinoma sequence data - fc_paper_dna_release - samples
Data supporting: "Patient-specific detection of cancer genes reveals recurrently perturbed processes in esophageal adenocarcinoma." Mourikis et al. WGS (BAM files) 521 samples
EGAD00001004775 | EGA
GenomicsAffymetrix raw files - samples
Affymetrix 6.0 cel files
EGAD00010000158 | EGA
GenomicsIllumina raw files - samples
Illumina HT 12 IDATS
EGAD00010000160 | EGA
GenomicsZNF703 is a common Luminal B breast cancer oncogene that differentially regulates luminal and basal progenitors in human mammary epithelium.
The telomeric amplicon at 8p12 is common in oestrogen receptor-positive (ER+) breast cancers. Array-CGH and expression analyses of 1172 primary breast tumours revealed that ZNF703 was the single gene within the minimal amplicon and was amplified predominantly in the Luminal B subtype. Amplification ...
EGAS00000000082 | EGA
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