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ProteomicsThe jasmonate regulome: Reconstructing a hormone signalling pathway from transcription factor activity to phenotypic outputs
We have investigated the genome regulatory network that controls responses to the hormone jasmonate in seedlings. There is much interest currently in understanding the systems-level actions of transcription factors. However, such studies can provide much greater biological insight if set in the cont...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2020-03-19 | PXD013592 | Pride
Arabidopsis thaliana Regulome Jasmonic acid Myc2 
TranscriptomicsRNAi profiling of Arabidopsis Col-0 plants (air control), 8 week old Col-0 plants treated for 24 hours with ethylene gas (10 ppm), and artificial microRNA knockdown mutants, amiR-ETP1/2 - interplay between ethylene, ETP1/ETP2 F-box proteins, and degradation of EIN2 triggers ethylene responses in Arabidopsis
A complex interplay between ethylene, ETP1/ETP2 F-box proteins, and degradation of EIN2 is essential for triggering ethylene responses in plants. The gaseous plant hormone ethylene can trigger myriad physiological and morphological responses in plants. While many ethylene signaling pathway component...
ORGANISM(S): Arabidopsis thaliana 
2009-12-05 | E-GEOD-14247 | biostudies-arrayexpress
TranscriptomicsPhosphorylation-Regulated Cleavage of ETHYLENE INSENSITIVE2 Mediates Hormone Signaling from the Endoplasmic Reticulum to the Nucleus
Ethylene gas is essential for many developmental processes and stress responses in plants. ETHYLENE INSENSITIVE2 (EIN2), an NRAMP-homologous integral membrane protein, plays an essential role in ethylene signaling but its function remains enigmatic. Here we report that phosphorylation-regulated pro...
ORGANISM(S): Arabidopsis thaliana 
2012-10-22 | E-MTAB-4360 | biostudies-arrayexpress
UnknownA transcription factor hierarchy defines an environmental stress response network.
Not available
S-EPMC5217750 | biostudies-literature
GenomicsWidespread Dynamic DNA Methylation in Response to Biotic Stress
Regulation of gene expression by DNA methylation is crucial for defining cellular identities and coordinating organism-wide developmental programs in many organisms. In plants, modulation of DNA methylation in response to environmental conditions represents a potentially robust mechanism to regulate...
ORGANISM(S): Arabidopsis thaliana 
2012-05-15 | E-MTAB-4226 | biostudies-arrayexpress
TranscriptomicsPatterns of Population Epigenomic Diversity in Arabidopsis thaliana (RNA-Seq)
Natural epigenetic variation provides a source for the generation of phenotypic diversity, but to understand its contribution to phenotypic diversity, its interaction with genetic variation requires further investigation. Here, we report population-wide DNA sequencing of genomes, transcriptomes, and...
ORGANISM(S): Arabidopsis thaliana 
2013-03-05 | E-GEOD-43858 | biostudies-arrayexpress
UnknownIntegrated multi-omics framework of the plant response to jasmonic acid.
Not available
S-EPMC7094030 | biostudies-literature
TranscriptomicsHighly integrated epigenome maps in Arabidopsis - methylcytosine immunoprecipitation
Part of a set of highly integrated epigenome maps for Arabidopsis thaliana. Keywords: methylcytosine ChIP-chip on tiling array Identification of cytosine DNA methylation by methylcytosine immunoprecipitation and whole-genome oligonucleotide tiling microarrays for wildtype Columbia-0.
ORGANISM(S): Arabidopsis thaliana 
2008-04-20 | E-GEOD-10969 | biostudies-arrayexpress
GenomicsHighly integrated single base resolution maps of the epigenome in Arabidopsis
Whole genome shotgun bisulfite sequencing, small RNA sequencing and transcriptome sequencing of wildtype Arabidopsis plants (Col-0), and met1, drm1 drm2 cmt3, and ros1 dml2 dml3 null mutants using the Illumina Genetic Analyzer. A comparison was performed with regions of the genome containing cytosin...
ORGANISM(S): Arabidopsis thaliana 
2008-04-20 | E-GEOD-10877 | biostudies-arrayexpress
GenomicsHighly integrated epigenome maps in Arabidopsis - whole genome shotgun bisulfite sequencing
Part of a set of highly integrated epigenome maps for Arabidopsis thaliana. Keywords: Illumina high-throughput bisulfite sequencing Whole genome shotgun bisulfite sequencing of wildtype Arabidopsis plants (Columbia-0), and met1, drm1 drm2 cmt3, and ros1 dml2 dml3 null mutants using the Illumina Gene...
ORGANISM(S): Arabidopsis thaliana 
2008-04-21 | E-GEOD-10966 | biostudies-arrayexpress
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