Ecotoxicological testing

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Unknown (54)
Transcriptomics (29)
Genomics (11)
Proteomics (3)
Metabolomics (2)

Organisms

Danio rerio (9)
Folsomia candida (4)
Andropogon gerardi (3)
Bacteria (3)
Canis lupus familiaris (3)
Cnidaria (3)
Cricetulus griseus (3)
Eukaryota (3)
Fasciola (3)
Hepatitis B virus (3)
Human betaherpesvirus 5 (3)
Madurella mycetomatis (3)
Mesocricetus auratus (3)
Miscanthus x giganteus (3)
Mus musculus (3)
Mycobacterium tuberculosis (3)
Orthoflavivirus (3)
Panicum virgatum (3)
Daphnia magna (2)
Eisenia andrei (2)
Chironomus riparius (2)
Scophthalmus maximus (2)
Rattus norvegicus (2)
Mus spretus (1)
Enchytraeus albidus (1)
Pimephales promelas (1)
Mytilus galloprovincialis (1)
Caenorhabditis elegans (1)
Eisenia fetida (1)
Enchytraeus crypticus (1)

Organisms

Folsomia candida (2)
Enchytraeus crypticus (1)
Chironomus riparius (1)
Enchytraeus albidus (1)
Eisenia andrei (1)
Cladocera (1)
Scophthalmus maximus (1)
Rattus norvegicus (1)
soil metagenome (1)

Repository

biostudies-arrayexpress (22)
ENA (11)
geo (7)
pride (3)
MetaboLights (2)

Tissue

Embryo (2)
Whole body (1)

Technology Type

Mass Spectrometry (3)
Shotgun proteomics (3)
Mass spectrometry (2)

Instrument Platform

Illumina HiSeq 4000 (9)
Illumina NovaSeq 6000 (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - positive (1)

Publication Date

2021 (12)
2013 (5)
2011 (5)
2012 (4)
2014 (2)
2025 (1)
2022 (1)
2010 (1)
2006 (1)
2023 (1)

CHEBI ID

CHEBI:17580 (2)
CHEBI:86181, CHEBI:86137 (1)
CHEBI:86129, CHEBI:42027 (1)
CHEBI:85076, CHEBI:84234 (1)
CHEBI:83122 (1)
CHEBI:82724, CHEBI:83413 (1)
CHEBI:78268, CHEBI:79110 (1)
CHEBI:76325 (1)
CHEBI:76302, CHEBI:84746 (1)
CHEBI:75610, CHEBI:75577 (1)
CHEBI:74986, CHEBI:84839 (1)
CHEBI:74964 (1)
CHEBI:74910 (1)
CHEBI:74908 (1)
CHEBI:74907 (1)
CHEBI:74342, CHEBI:28610 (1)
CHEBI:73779, CHEBI:70744 (1)
CHEBI:73134, CHEBI:73004 (1)
CHEBI:73121, CHEBI:73008 (1)
CHEBI:68946, CHEBI:72651 (1)
CHEBI:65667 (1)
CHEBI:64554, CHEBI:27897 (1)
CHEBI:63961, CHEBI:57780, CHEBI:16462 (1)
CHEBI:60722 (1)
CHEBI:60286 (1)
CHEBI:60257, CHEBI:28229 (1)
CHEBI:60039, CHEBI:17203 (1)
CHEBI:58585, CHEBI:28718 (1)
CHEBI:58515, CHEBI:27592 (1)
CHEBI:58455, CHEBI:18347 (1)

Metabolite Name

Skatol (1)
Simvastatin lactone (1)
Phosphatidylcholine(18:0/18:1w9) (1)
GPCho(34:0) (1)
GPCho(18:3n3/18:3n3) (1)
GPCho(18:2w6/18:2w6) (1)
N-Stearoylethanolamide (1)
12-Hydroxy-Octadecanoic Acid (1)
L-Hexanoic acid ester with (3-carboxy-2-hydroxypropyl)trimethylammonium hydroxide inner salt (1)
(Z)-N-[(E,2S,3R)-1,3-bis(oxidanyl)octadec-4-en-2-yl]docos-13-enamide (1)
(3R)-3-[(Z)-octadec-9-enoyl]oxy-4-(trimethylazaniumyl)butanoate (1)
(-)-Tetradecanoylcarnitine (1)
L-gamma-glutamyl-l-alpha-aminobutyrylglycine (1)
N-(1,5-dimethyl-3-oxidanylidene-2-phenyl-pyrazol-4-yl)methanamide (1)
C18 Sphingomyelin (1)
OSF (1)
N-L-gamma-Glutamyl-L-tyrosine (1)
2-amino-5-[(1-carboxy-2-phenyl-ethyl)amino]-5-keto-valeric acid (1)
DAG(32:0) (1)
(2S)-3-(5-mercapto-3-methyl-imidazol-4-yl)-2-(methylammonio)propionate (1)
NODULARIN (1)
Phosphatidylserine(38:4) (1)
Phosphatidylserine(36:1) (1)
C16 sphingomyelin (1)
PE(18:0/20:4w6) (1)
Elthon (1)
(R)-Dodecanoylcarnitine (1)
22:0(2R-OH) (1)
26-oxidanylhexacosanoic acid (1)
1-Nitroso-Piperidine (1)

First Public Date

2014 (8)
2024 (1)
2022 (1)
2020 (1)

Study type

Transcription profiling by array (11)
RNA-seq of coding RNA (6)
Animal - High-throughput sequencing (4)
Unknown experiment type (1)

Release Date

2021 (14)
2024 (9)
2022 (8)
2023 (7)
2025 (5)
2011 (5)
2013 (4)
2018 (4)
2012 (3)
2020 (3)
2019 (3)
2017 (3)
2015 (2)
2014 (1)
2010 (1)
2006 (1)
2026 (1)
2016 (1)
1998 (1)

Lab affiliation

Fraunhofer Attract Eco’n’OMICs, Fraunhofer Institute for Molecular Biology and Applied Ecology IME, Auf dem Aberg 1, 57392 Schmallenberg. (2)
University of Salzburg (1)

Tags

xref:PubMed:24382659 (1)
xref:PubMed:21360579 (1)
xref:PubMed:22697906 (1)
xref:PubMed:23126638 (1)
xref:PubMed:21627958 (1)
xref:PubMed:36858316 (1)
xref:PubMed:22623925 (1)

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Experimental and computational approaches for deep metabolome annotation with application to the ecotoxicological model organism Daphnia magna

Identifying metabolomes with greater coverage and confidence is a critical step towards interpreting the metabolic basis of human and environmental health. Yet for over two decades the field of metabolomics has been inhibited by limited metabolite identification. To address this, we developed the...

MTBLS2273 | MetaboLights

Automated Image-Based Fluorescence Screening of Mitochondrial Membrane Potential in Daphnia magna: An Advanced Ecotoxicological Testing Tool.

Not available

S-EPMC11393999 | biostudies-literature

Spent coffee grounds as a suitable alternative to standard soil in ecotoxicological tests.

Not available

S-EPMC10894160 | biostudies-literature

From bacteria to fish: ecotoxicological insights into sulfamethoxazole and trimethoprim.

Not available

S-EPMC11374860 | biostudies-literature

Short-term exposure to effluent from bulk drug industries

The Patancheru area near Hyderabad in India is recognized as a key link in the global supply chain for many bulk drugs. A central treatment plant receives wastewater from about 90 different manufacturers and the resulting complex effluent has contaminated surface, ground and drinking water in the re...

ORGANISM(S): Rattus norvegicus

2012-09-01 | E-GEOD-23983 | biostudies-arrayexpress

A novel real-world ecotoxicological dataset of pelagic microbial community responses to wastewater.

Not available

S-EPMC7253417 | biostudies-literature

Ecotoxicological Assessment of Sediment Samples Impacted by Wastewater Treatment Plant Effluents Transporting Contaminants of Emerging Concern.

Not available

S-EPMC12387254 | biostudies-literature

A Meta-analysis of Ecotoxicological Hazard Data for Nanoplastics in Marine and Freshwater Systems.

Not available

S-EPMC7756468 | biostudies-literature

Minimizing Experimental Testing on Fish for Legacy Pharmaceuticals.

Not available

S-EPMC9893720 | biostudies-literature

Eisenia andrei exposed to different 2-phenylethyl isothiocyanate concentrations in soil

Background: Earthworms are essential for a healthy soil ecosystem, performing key functions such as bioturbation. The soil ecosystem can be challenged by natural toxins such as isothiocyanates (ITC), secondary metabolites produced by many commercial crops. This study investigated the effects of the ...

ORGANISM(S): Eisenia andrei

2013-08-11 | E-GEOD-43600 | biostudies-arrayexpress

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99 Results

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