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TranscriptomicsTranscription profiling of Arabidopsis thaliana Ler ecotype developmental series
Leaf development has been monitored chiefly by following anatomical markers. Analysis of transcriptome dynamics during leaf maturation revealed multiple expression patterns that rise or fall with age or that display age specific peaks. These were used to formulate a digital differentiation index (DD...
ORGANISM(S): Arabidopsis thaliana 
2008-10-25 | E-GEOD-12676 | biostudies-arrayexpress
TranscriptomicsRNAi profiling of Arabidopsis knocked down and overexpressing CIN-TCP genes
Leaf development has been monitored chiefly by following anatomical markers. Analysis of transcriptome dynamics during leaf maturation revealed multiple expression patterns that rise or fall with age or that display age specific peaks. These were used to formulate a digital differentiation index (DD...
ORGANISM(S): Arabidopsis thaliana 
2008-10-25 | E-GEOD-12691 | biostudies-arrayexpress
TranscriptomicsRNA-Seq of single cells from the Arabidopsis root
The definition of cell identity is a central problem in biology. Single-cell RNA-seq provides a wealth of information regarding the developmental state of individual cells. However, better methods are needed to map the identity of single cells, especially during identity transitions. We have develop...
ORGANISM(S): Arabidopsis thaliana 
2015-03-12 | E-MTAB-4125 | biostudies-arrayexpress
TranscriptomicsDifferentiating Arabidopsis shoots from leaves by combined YABBY activities
In seed plants, leaves are born on radial shoots but unlike shoots they are determinate dorsiventral organs made of flat lamina. YABBY genes are found only in seed plants and in all cases studied, are expressed primarily in lateral organs and in a polar manner. Despite their simple expression, Arabi...
ORGANISM(S): Arabidopsis thaliana 
2010-08-01 | E-GEOD-21705 | biostudies-arrayexpress
TranscriptomicsTranscriptional profiling of the Arabidopsis root quiescent center
The Arabidopsis quiescent center (QC) is a small group of cells with low mitotic activity located at the center of the root stem cell niche. Its transcriptional profile was previously analyzed using two repeats of cells FACS isolated using the AGL42 marker. To get more power in analyzing QC transcri...
ORGANISM(S): Arabidopsis thaliana 
2014-12-17 | E-GEOD-64253 | biostudies-arrayexpress
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