Egg culture - OmicsDI

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Organisms

Mus musculus (8)
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chicken gut metagenome (1)
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mouse gut metagenome (1)

Repository

biostudies-arrayexpress (198)
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pride (37)
geo (14)
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Tissue

Cell culture (23)
Egg (9)
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Cell suspension culture (2)
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Blastocyst (1)
Egg cell (1)
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Cotyledon (1)
Flower (1)
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Disease

Disease free (2)
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Breast cancer (1)
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Technology Type

Mass Spectrometry (37)
Shotgun proteomics (17)
Bottom-up proteomics (10)
Affinity purification coupled with mass spectrometry proteomics (8)
Data-dependent acquisition (6)
Gel-based experiment (5)
Mass spectrometry (4)
SWATH MS (4)
NMR spectroscopy (2)
Glycoproteomics (2)
Top-down proteomics (2)
SRM/MRM (1)

Instrument Platform

Illumina NovaSeq 6000 (9)
Illumina HiSeq 2500 (6)
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NextSeq 500 (2)
Gas Chromatography MS - Positive (GC-MS (Positive)) (2)
Nuclear Magnetic Resonance (NMR) - (2)
STAR v2.5.3a, rpkmforgenes, RSeQC 2.6.1 (1)
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Oligo(dT) primer and SuperScript II reverse transcriptase (ThermoFisher Scientific), TapeStation 4200 or 2100 Bioanalyzer with a DNA High Sensitivity chip (Agilent Biotechnologies) (1)
Aria III (BD Biosciences) (1)
Agilent 2100 Bioanalyzer (Agilent Technologies); Qubit Fluorometer (Thermo Fisher Scientific); standard electrophoresis system (1)
NanoDrop spectrophotometer, Agilent 2100 Bioanalyzer (1)
10X Genomics Chromium Controller (1)
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Illumina Genome Analyzer IIx (1)
None (1)
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Publication Date

2013 (25)
2011 (25)
2016 (19)
2015 (19)
2008 (19)
2012 (18)
2014 (17)
2010 (17)
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2025 (14)
2023 (13)
2009 (9)
2019 (8)
2021 (6)
2024 (5)
2022 (5)
2020 (5)
2007 (5)
2006 (3)
2018 (2)
2017 (2)
2004 (2)

CHEBI ID

CHEBI:15366 (2)
CHEBI:30751 (2)
CHEBI:16680 (2)
CHEBI:27266 (2)
CHEBI:15428 (2)
CHEBI:15355 (2)
CHEBI:26986 (2)
CHEBI:16335 (2)
CHEBI:15741 (2)
CHEBI:17822 (2)
CHEBI:17202 (2)
CHEBI:30769 (2)
CHEBI:17234 (2)
CHEBI:17596 (2)
CHEBI:15891 (2)
CHEBI:145775 (1)
CHEBI:35381 (1)
CHEBI:141551 (1)
CHEBI:141550 (1)
CHEBI:61112 (1)
CHEBI:77444 (1)
CHEBI:64598 (1)
CHEBI:64596 (1)
CHEBI:64595 (1)
CHEBI:64589 (1)
CHEBI:64588 (1)
CHEBI:64584 (1)
CHEBI:60430 (1)
CHEBI:16337 (1)
CHEBI:143770 (1)

Metabolite Name

Inosinic acid (2)
Taurine (2)
Valine 2 (2TMS) (1)
Sugar 6 (1)
Ribo-hexos-3-ulose 2 (1)
Ribo-hexos-3-ulose (1)
Fatty acid 3 (1)
Trans-9-Octadecanic acid (1)
Trans-13-Octadecanic acid (1)
Tagatose 2 (1)
Silanamine (1)
3,4,dihydroxybutanoic acid (1)
Heptadecanic acid (1)
Glycerol glycoside (1)
Gluconic acid 3 (1)
Gluconic acid 2 (1)
Ethanolamine 1 (102) (1)
3-deoxy-arabino-hexonic acid (1)
2-deoxy-pentos-3-ulose (1)
2-deoxy-pentos-3-ulose (2) (1)
Ricinoleic acid (1)
NAG (1)
4-bromofluorobenzene (1)
2-cyclopenten-1-one (1)
Thiocyanic acid, methyl ester (1)
1-undecene (1)
3-methyl-1-butanol (1)
Ethanolamine 2 (1)
Meso-erythritol (1)
Cyclopentanol (1)

First Public Date

2014 (11)
2025 (8)
2026 (7)
2020 (7)
2023 (6)
2024 (4)
2021 (3)
2015 (2)
2022 (1)
2018 (1)
2016 (1)

Classification

bacteria (1)

Study type

Transcription profiling by array (119)
RNA-seq of coding RNA (31)
ChIP-seq (14)
RNA-seq of coding RNA from single cells (8)
Comparative genomic hybridization by array (6)
RNA-seq of non coding RNA (4)
ChIP-chip by tiling array (3)
ChIP-chip by array (3)
Proteomic profiling by array (3)
Methylation profiling by high throughput sequencing (3)
Unknown experiment type (1)
Animal - High-throughput sequencing (1)
Other (1)
ScATAC-seq (1)

Release Date

2021 (44)
2023 (40)
2022 (39)
2015 (37)
2025 (35)
2013 (35)
2016 (34)
2019 (34)
2011 (32)
2020 (31)
2014 (30)
2024 (29)
2018 (27)
2008 (24)
2012 (22)
2010 (19)
2017 (16)
2026 (13)
2009 (11)
2007 (7)
2006 (4)
2005 (3)
2004 (2)
2002 (2)
1997 (2)
2003 (1)
2000 (1)
1999 (1)
1998 (1)

Lab affiliation

Ruhr University Bochum, Medical Faculty, Medizinisches Proteom-Center (3)
Technical University of Munich (TUM), TUM School of Natural Sciences, Department Bioscience, Chair of Organic Chemistry II, Center for Functional Protein Assemblies (CPA), Ernst-Otto-Fischer Str. 8, Garching 85748, Germany (1)
Smurfit Institute of Genetics, Trinity College Dublin, Dublin 2, Ireland (1)
Center for RNA Research, Institute for Basic Science, Seoul National University (1)
Ruhr University Bochum Medical Faculty Medizinisches Proteom-Center (1)
Institute for Molecular Bioscience - University of Queensland (1)
Yangzhou University,Jiangsu,China (1)
Chromosomal Replication Laboratory, Institute for Cancer and Genomic Sciences, IBR west, WX2.62, University of Birmingham, Edgbaston, Birmingham, B15 2TT (1)
Dr Aga Gambus, Reader in Genome Replication, Wellcome and Lister Fellow, Chromosomal Replication Laboratory, Institute for Cancer and Genomic Sciences, IBR west, WX2.67, University of Birmingham, Edgbaston, Birmingham, B15 2TT (1)
Developmental Biology, Institute of Biodynamics and Biocomplexity, Department of Biology, Faculty of Science, Utrecht University, Padualaan 8, 3584 CH, Utrecht, The Netherlands (1)
Max Planck Institute for Infection Biology, Berlin, Germany (1)
Centro de Referencia para Lactobacilos (CERELA)-CCT NOA Sur- CONICET (1)
Buck Institute for Research on Aging (1)
National Institute of Standards and Technology (1)
Proteomics and Signal Transduction, Max-Planck-Institute of Biochemistry, Am Klopferspitz 18, 82152 Martinsried, Germany (1)
Department of Biology University of Copenhagen Denmark (1)
Military Health Institute, Prague, Czech Republic (1)
Departament de Bioquímica i Biologia Molecular, Facultat de Ciències Biològiques, Universitat de València, Burjassot (Valencia), Spain (1)
Globe Institute, University of Copenhagen, Øster Farimagsgade 5, 1353 Copenhagen, Denmark (1)
Molecular Genetics, RPTU Kaiserslautern (1)
Department of Obstetrics and Gynaecology, Medical Faculty, Cologne University, 50931, Cologne, Germany (1)
IGMM, CNRS, University of Montpellier, Montpellier, France Ligue Nationale Contre le Cancer team (1)
Cell Biology, Neurobiology and Biophysics, Department of Biology, Faculty of Science, Utrecht University, The Netherlands (1)
Andrew W. Mellon Director, Scientific Research, Conservation and Science, The Art Institute of Chicago (1)
Max Planck Institute for Molecular Biomedicine Mass Spectrometry Unit Röntgenstr. 20 48149 Münster Germany (1)
Molecular Physiology, Leiden Institute for Chemistry, Leiden University, The Netherlands (1)
Boston University School of Medicine (1)
Molecular Genetics (1)
Division of Genome Sciences and Cancer, The John Curtin School of Medical Research, The Australian National University, Canberra (1)
Cell Biology, Faculty of Science, Utrecht University, TheNetherlands (1)

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Effect of fatty acids from CLA-enriched egg yolk on MCF-7 adenocarcinoma cells

It was analyzed whole genome microarray data to describe the changes in gene transcription profile in human MCF-7 cancer cells under the influence of fatty acid extracts from CLA-enriched and non-enriched egg yolks.Those results might be found useful in assessing the application of CLA-enriched egg ...

ORGANISM(S): Homo sapiens

2015-01-30 | E-GEOD-65397 | biostudies-arrayexpress

A Novel Egg-In-Cube System Enables Long-Term Culture and Dynamic Imaging of Early Embryonic Development.

Not available

S-EPMC9133561 | biostudies-literature

Redirecting antibody responses from egg-adapted epitopes following repeat vaccination with recombinant or cell culture-based versus egg-based influenza vaccines.

Not available

S-EPMC10767121 | biostudies-literature

Vaccine effectiveness of cell-culture relative to egg-based inactivated influenza vaccine during the 2017-18 influenza season.

Not available

S-EPMC7043803 | biostudies-literature

3D Cell Culture of Human Salivary Glands Using Nature-Inspired Functional Biomaterials: The Egg Yolk Plasma and Egg White.

Not available

S-EPMC7672643 | biostudies-literature

Differences in gene expression profiles between human preimplantation embryos cultured in two different IVF culture media

Study question: Is gene expression in human preimplantation embryos affected by medium used for culturing embryos during an IVF treatment? Summary answer: Six days of in vitro culture of human preimplantation embryos resulted in a medium-dependent expression level of genes involved in apoptosis, pr...

ORGANISM(S): Homo sapiens

2015-07-08 | E-MTAB-3405 | biostudies-arrayexpress

Reprogramming of fish somatic cells for nuclear transfer is primed by Xenopus egg extract

Somatic cell reprogramming in vitro prior to nuclear transfer is one strategy expected to improve clone survival during development. In this study, we investigated the reprogramming extent of fish fin somatic cells after in vitro exposure to Xenopus egg extract and subsequent culture. Using a cDNA m...

ORGANISM(S): Carassius auratus

2023-01-01 | GSE205854 | GEO

Immunogenicity of High-Dose Egg-Based, Recombinant, and Cell Culture-Based Influenza Vaccines Compared With Standard-Dose Egg-Based Influenza Vaccine Among Health Care Personnel Aged 18-65 Years in 2019-2020.

Not available

S-EPMC10249269 | biostudies-literature

Efficient generation of ETX embryoids that recapitulate the entire window of murine egg cylinder development

The murine embryonic–trophoblast–extra-embryonic endoderm (ETX) model is an integrated stem cell–based model to study early postimplantation development. It is based on the self-assembly potential of embryonic, trophoblast, and hypoblast/primitive/visceral endoderm-type stem cell lines (ESC, TSC, an...

ORGANISM(S): Mus musculus

2023-01-25 | GSE206132 | GEO

Reprogramming of fish somatic cells for nuclear transfer is primed by Xenopus egg extract

PRJNA847954 | ENA

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