Ekici A B AB - OmicsDI

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Unknown (162)
Transcriptomics (2)
Genomics (1)
Metabolomics (1)
Proteomics (1)

Organisms

Homo sapiens (3)
Mus musculus (1)
Mycobacterium tuberculosis (1)

Repository

biostudies-arrayexpress (3)
MetaboLights (1)
pride (1)

Tissue

Macrophage (1)

Technology Type

Mass spectrometry (1)
Mass Spectrometry (1)
Shotgun proteomics (1)

Instrument Platform

Illumina HiSeq 2500 (1)
Q Exactive (1)

Publication Date

2023 (3)
2021 (1)
2019 (1)

CHEBI ID

CHEBI:100241 (1)
CHEBI:10033 (1)
CHEBI:10072 (1)
CHEBI:101278 (1)
CHEBI:10642 (1)
CHEBI:107736 (1)
CHEBI:111517 (1)
CHEBI:119915 (1)
CHEBI:131434 (1)
CHEBI:131454 (1)
CHEBI:131623 (1)
CHEBI:132188 (1)
CHEBI:132948 (1)
CHEBI:132966 (1)
CHEBI:133005 (1)
CHEBI:133026 (1)
CHEBI:133032 (1)
CHEBI:133057 (1)
CHEBI:133066 (1)
CHEBI:133089 (1)
CHEBI:133096 (1)
CHEBI:133101 (1)
CHEBI:133112 (1)
CHEBI:133115 (1)
CHEBI:133119 (1)
CHEBI:133148 (1)
CHEBI:133181 (1)
CHEBI:133183 (1)
CHEBI:133185 (1)
CHEBI:133186 (1)

Metabolite Name

1,2,3-benzenetriol sulfate (1)
1,3,7-trimethylurate (1)
1,3-dimethylurate (1)
1,6-anhydroglucose (1)
1,7-dimethylurate (1)
1-(1-enyl-palmitoyl)-2-arachidonoyl-GPE (P-16:0/20:4) (1)
1-aminocyclopropanecarboxylic acid (1)
1-methyladenine (1)
1-methylguanidine (1)
1-methylguanine (1)
1-methylhistamine (1)
1-methylhistidine (1)
1-methylnicotinamide (1)
1-methylurate (1)
1-methylxanthine (1)
1-palmitoyl-2-linoleoyl-GPC (16:0/18:2) (1)
1-palmitoyl-2-oleoyl-GPC (16:0/18:1) (1)
1-stearoyl-2-arachidonoyl-GPC (18:0/20:4) (1)
1-stearoyl-2-linoleoyl-GPC (18:0/18:2) (1)
12-dehydrocholate (1)
16a-hydroxy DHEA 3-sulfate (1)
2'-O-methylcytidine (1)
2'-O-methyluridine (1)
2'-deoxyadenosine (1)
2'-deoxyguanosine (1)
2,3-dihydroxyisovalerate (1)
2,3-dihydroxypyridine (1)
2,8-quinolinediol (1)
2-acetamidophenol sulfate (1)
2-aminoadipate (1)

Study type

DNA-seq (1)
Transcription profiling by array (1)
Methylation profiling by array (1)

Release Date

2015 (26)
2014 (17)
2023 (14)
2018 (14)
2017 (12)
2021 (11)
2016 (11)
2013 (11)
2019 (10)
2012 (8)
2011 (7)
2025 (6)
2024 (5)
2020 (4)
2022 (3)
2010 (2)
2009 (2)
2026 (1)
2005 (1)

Lab affiliation

Institute for cell and Molecular biology (ICAMB), Faculty of Medical Sciences, Newcastle University, NewcastleUpon Tyne, UK (1)

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A peroxisomal disorder of severe intellectual disability, epilepsy, and cataracts due to fatty acyl-CoA reductase 1 deficiency.

Not available

S-EPMC4225589 | biostudies-literature

Inherited mutations in 17 breast cancer susceptibility genes among a large triple-negative breast cancer cohort unselected for family history of breast cancer.

Not available

S-EPMC4302212 | biostudies-literature

Rare genetic variants affecting urine metabolite levels link population variation to inborn errors of metabolism

We investigated the cumulative contribution of rare, exonic genetic variants on the concentration of 1,487 metabolites and 53,714 metabolite ratios in urine by performing gene-based tests based on 226,233 variants from up to 4,864 participants of the German Chronic Kidney Disease (GCKD)...

2021-03-09 | MTBLS284 | MetaboLights

Combined phosphoproteome analysis of the response to mycobacterial cord factor reveals a dichotomy of Mincle-dependent and -independent signaling in macrophages

Sensing of Mycobacterium tuberculosis by the immune system relies on recognition by macrophages. Mycobacterial cord factor, trehalose-6,6’-dimycolate (TDM), is the most abundant cell wall glycolipid and binds to the C-type lectin receptor Mincle. To explore the kinase signaling linking the TDM-Mincl...

ORGANISM(S): Mus musculus (Mouse) Mycobacterium tuberculosis

2019-01-17 | PXD009513 | Pride