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TranscriptomicsRNA expression for ethanologenic E coli strains LY180 and LY180 del yqhC in the absence and presence of furfural
The data explore the transcription of strain LY180 and the yqhC deletion mutant LY180 del yqhC without and with 0.5 g/L furfural. LY180 and LY180 del yqhC are described in Turner, PC, EN Miller, LR Jarboe, P Pharkya, KT Shanmugam, and LO Ingram. 2009. Escherichia coli YqhC regulates transcription of...
ORGANISM(S): Escherichia coli 
2010-08-24 | E-GEOD-17788 | biostudies-arrayexpress
UnknownRegulation of a muralytic enzyme-encoding gene by two non-coding RNAs.
Not available
S-EPMC5785216 | biostudies-literature
TranscriptomicsResponse of ethanologenic E coli strains LY180 and EMFR9 to furfural
The data explore the transcriptional response of strain LY180 and the furfural-resistant derivative EMFR9 to 0.5 g/L furfural LY180 and EMFR9 and differences in their expression profiles are described in Miller, E. N., L. R. Jarboe, L. P. Yomano, S. W. York, K. T. Shanmugam, and L. O. Ingram. 2009. ...
ORGANISM(S): Escherichia coli 
2010-05-06 | E-GEOD-17786 | biostudies-arrayexpress
UnknownCell wall hydrolases affect germination, vegetative growth, and sporulation in Streptomyces coelicolor.
Not available
S-EPMC2795291 | biostudies-literature
UnknownThe bldD gene of Streptomyces coelicolor A3(2): a regulatory gene involved in morphogenesis and antibiotic production.
Not available
S-EPMC107056 | biostudies-literature
TranscriptomicsTranscription profiling of human airway epithelial cells before and after segmental allergen challenge to identify effects of allergen challenge on airway epithelial cell gene expression
Allergen exposure induces the airway epithelium to produce chemoattractants, proallergic interleukins, matrix-modifying proteins, and proteins that influence the growth and activation state of airway structural cells. These proteins, in turn, contribute to the influx of inflammatory cells and change...
ORGANISM(S): Homo sapiens 
2007-11-21 | E-GEOD-3004 | biostudies-arrayexpress
TranscriptomicsRNA expression for ethanologenic Escherichia coli strain LY180 in the absence and presence of 15 mM furfural for 15 min
The data explore the transcriptional response of strain LY180 to 15 mM furfural under anaerobic fermentation conditions. The expression differences of oxidoreductase in LY180 are described. Total RNA was prepared from cultures of LY180 immediately before and 15 min after addition of furfural to 15 m...
ORGANISM(S): Escherichia coli 
2012-01-10 | E-GEOD-34956 | biostudies-arrayexpress
TranscriptomicsGlobal gene transcription analysis in response to changes in chromosome supercoiling in Streptomyces coelicolor
We address the transcriptional response to both novobiocin-induced rapid chromosome relaxation or long-term topological imbalance, both increased and decreased supercoiling, in environmental antibiotic-producing bacteria belonging to the Streptomyces genus.
ORGANISM(S): Streptomyces coelicolor A3(2) 
2019-06-22 | E-MTAB-8071 | biostudies-arrayexpress
TranscriptomicsIn utero exposure to arsenic via drinking water impairs lung development and mucociliary clearance genes.
In utero exposure to arsenic via drinking water increases the risk of lower respiratory tract infections during infancy and mortality from bronchiectasis in adulthood. Pregnant mice were exposed to arsenic, and gene expression patterns were profiled in peripheral lung tissue obtained from the offspr...
ORGANISM(S): Mus musculus 
2013-06-04 | E-GEOD-37831 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Streptomyces coelicolor mutant unable to erect aerial hyphae identifies a previously unknown layer of erial mycelium surface proteins (the "chaplins")
The filamentous bacterium Streptomyces coelicolor differentiates by forming specialized, spore-bearing aerial hyphae that grow into the air. Using microarrays, we identified genes that are down-regulated in a mutant unable to erect aerial hyphae. Through this route, we identified a previously unkno...
ORGANISM(S): Streptomyces coelicolor 
2007-06-11 | E-SMDB-4093 | biostudies-arrayexpress
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