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ProteomicsOptimization of statistical methods impact on quantitative proteomics data
As tools for quantitative label-free mass spectrometry (MS) rapidly develop a consensus about the best practices is not apparent. In the work described here we compared five popular statistical methods for detecting differential protein expression from quantitative MS data using both controlled expe...
ORGANISM(S): Candida albicans (Yeast) 
2020-01-13 | PXD002099 | Pride
Reproducibility Statistical methods Proteomics Quantitative analysis Rots Label-free mass spectrometry 
TranscriptomicsGenome-wide analysis of early transcriptional events induced by cytokine IL-4 in human cord blood CD4+ T cells
The aim of this dataset was to study in detail the transcription kinetics initiated by cytokine IL-4 in early differentiation of Th2 cells. Total RNA obtained from activated and IL-4 & anti-IL-12 treated cord blood CD4+ T cells, 0.5, 1, 2, 4, 6, 12, 24, 48, and 72 hours after initiation of the cultu...
ORGANISM(S): Homo sapiens 
2010-06-25 | E-GEOD-17974 | biostudies-arrayexpress
TranscriptomicsGenome-wide expression kinetics of children with Type 1 diabetes (T1D) -associated autoantibodies or progression towards clinical T1D, compared to healthy matched controls .
To unravel genes and molecular pathways involved in the pathogenesis of type 1 diabetes (T1D), we performed genome-wide gene expression profiling of prospective venous blood samples from children developing T1D-associated autoantibodies or progressing towards clinical diagnosis. 357 peripheral blood...
ORGANISM(S): Homo sapiens 
2014-02-20 | E-GEOD-43488 | biostudies-arrayexpress
TranscriptomicsStat6 mediated regulation of transcription to initiate Th2 program in human T cells
This SuperSeries is composed of the following subset Series: GSE17850: Genome-wide detection of STAT6 binding sites in IL-4 treated naive human CD4+ T cells GSE17851: Genome-wide analysis of STAT6 target genes in IL-4 treated human cord blood CD4+ cells GSE17974: Genome-wide analysis of early transc...
ORGANISM(S): Homo sapiens 
2010-06-24 | E-GEOD-18017 | biostudies-arrayexpress
Genomicsena-DATASET-CGP-UT-05-06-2013-17:49:33:224-98 - samples
Description not provided
EGAD00001000597 | EGA
GenomicsCancer Genomics Project RCC Data Access Committee
Data Access Committee EGAC00001000109
EGAC00001000109 | EGA
GenomicsEGAD00010000484
ccRCC control samples using 250K Nsp
EGAD00010000484 | EGA
GenomicsccRCC_expression - samples
ccRCC case samples using expression array
EGAD00010000486 | EGA
GenomicsccRCC_250K_tumor - samples
ccRCC case samples using 250K Nsp
EGAD00010000480 | EGA
GenomicsccRCC_methylation - samples
ccRCC case samples using methylation array
EGAD00010000482 | EGA
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