Rots - OmicsDI

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Unknown (228)
Genomics (28)
Proteomics (16)
Transcriptomics (7)

Organisms

Alphavirus (15)
Archaea (15)
Bacteria (15)
Betaherpesvirinae (15)
Borrelia (15)
Botrytis cinerea (15)
Candida albicans (15)
Clostridium perfringens (15)
Eukaryota (15)
Fungi (15)
Hepatitis B virus (15)
Herpesvirales (15)
Human betaherpesvirus 5 (15)
Influenza A virus (15)
Influenza C virus (15)
Japanese encephalitis virus group (15)
Mammarenavirus (15)
Miscanthus x giganteus (15)
Mycobacterium tuberculosis (15)
Orthoflavivirus (15)
Panicum virgatum (15)
Rattus (15)
Saccharomyces cerevisiae (15)
Homo sapiens (12)
Fusarium oxysporum (1)
Pectobacterium atrosepticum (1)
Mus musculus (1)
Laetiporus sulphureus (1)
Fusarium verticillioides (1)
Caenorhabditis elegans (1)

Organisms

Botryosphaeria dothidea CBS 115476 (1)
Fusarium oxysporum f. sp. narcissi (1)
Pectobacterium atrosepticum SCRI1043 (1)
Colletotrichum (1)
Lasiodiplodia pseudotheobromae (1)
Laetiporus sulphureus (1)
Phytophthora capsici (1)
Caenorhabditis elegans (1)
Fusarium verticillioides (1)
Homo sapiens (1)

Repository

ENA (17)
pride (15)
EGA (11)
geo (4)
biostudies-arrayexpress (3)
MassIVE (1)

Tissue

Cell culture (3)
Intestine (2)
Stem cell (2)
Blood plasma (1)
Blood serum (1)
Breast (1)
Bronchoalveolar lavage (1)
Cell suspension culture (1)
Embryo (1)
Liver (1)
Permanent cell line cell (1)

Disease

Celiac disease (3)
Amyotrophic lateral sclerosis (1)
Breast cancer (1)
Sarcoidosis (1)

Technology Type

Mass Spectrometry (15)
Shotgun proteomics (10)
Data-independent acquisition (4)
Bottom-up proteomics (2)
Affymetrix_250K(Nsp) - gtype, Illumina HiSeq 2000, Agilent Human Whole Genome 4x44k v2 - Feature Extraction, Illumina Infinium HumanMethylation 450K - GenomeStudio (1)
Affinity purification coupled with mass spectrometry proteomics (1)
DiaPASEF (1)

Instrument Platform

Illumina NovaSeq 6000 (2)
Q Exactive (1)

Publication Date

2026 (5)
2025 (5)
2020 (5)
2021 (2)
2008 (1)
2024 (1)
2023 (1)
2019 (1)
2016 (1)
2015 (1)

First Public Date

2020 (5)
2024 (3)
2025 (2)
2023 (2)
2026 (1)
2021 (1)
2019 (1)
2017 (1)
2013 (1)

Classification

fungi (2)
bacteria (1)

Study type

Unknown experiment type (1)
RNA-seq of coding RNA from single cells (1)
RNA-seq of coding RNA (1)

Release Date

2022 (33)
2023 (30)
2021 (30)
2024 (29)
2018 (20)
2025 (18)
2017 (14)
2020 (12)
2019 (11)
2016 (10)
2015 (6)
2014 (4)
2012 (4)
2026 (3)
2013 (3)
2008 (1)
2011 (1)
2007 (1)
2002 (1)

Lab affiliation

Turku Bioscience Centre, University of Turku and Åbo Akademi University, Turku, Finland (2)
Biochemistry and Proteomics Laboratories, Deparment of Chemistry and biomolecular Science, Clarkson University, Potsdam NY, USA (1)
Center for Proteomics and Metabolomics, Leiden University Medical Center Leiden, the Netherlands (1)
Current: Van 't Hoff Institute for Molecular Sciences, University of Amsterdam, The Netherlands; Previous: Turku Centre for Biotechnology, University of Turku and Åbo Akademi University, Turku, Finland (1)
Department of Functional Genomics, Interfaculty Institute for Genetics and Functional Genomics, University Medicine Greifswald, Greifswald, Germany (1)
Dr. Elke Hammer Universitätsmedizin Greifswald Interfakultäres Institut für Genetik und Funktionelle Genomforschung Abteilung für Funktionelle Genomforschung Felix-Hausdorff-Straße 8 17487 Greifswald Germany (1)
Laboratorio C036, Departamento Biología Molecular y Biotecnología, Instituto de Investigaciones Biomédicas, Universidad Nacional Autónoma de México (UNAM), Ciudad Universitaria, Ciudad de México, México (1)
Max F. Perutz Laboratories, University of Vienna, Austria (1)
Susanne Gabrielsson Associate Professor Experimental Immunology Karolinska Institutet Dept. of Medicine, Translational Immunology Unit KS L2:04, 17 176 Stockholm Sweden NOTE : the proteomic data was produced at Turku University/Åbo Akademi Turku Centre for Biotechnology. Directed by Professor Riitta Lahesmaa http://www.btk.fi/home/main/ http://www.btk.fi/proteomics/front-page/ (1)
Turku Bioscience Centre, University of Turku and Åbo Akademi University (1)
Turku Centre for Biotechnology, University of Turku and Åbo Akademi University, Tykistökatu 6, FI-20520 Turku, Finland; Department of Mathematics and Statistics, FI-20014, University of Turku, Finland (1)
University Medicine Greifswald (1)
University of Oxford (1)
mRNA Regulation and Development, Institute of Human Genetics, CNRS-Univ Montpellier, Montpellier, France (1)