Sort   by:  
 Page size 
GenomicsPlants regenerated from tissue culture contain stable epigenome changes in rice
Most transgenic crops are produced through tissue culture. The impact of utilizing such methods on the plant epigenome is poorly understood. Here we generated whole-genome, single-nucleotide resolution maps of DNA methylation in several transgenic rice lines. We found that all tested transgenic plan...
ORGANISM(S): Oryza sativa Japonica Group 
2013-03-26 | E-GEOD-42410 | biostudies-arrayexpress
ProteomicsHistone modifications during acute S-phase defects
Long-term perturbation of de novo chromatin assembly during DNA replication has profound effects on epigenome maintenance and cell fate. The early mechanistic origin of these functional defects is unknown. Here, we combine acute degradation of Chromatin Assembly Factor 1 (CAF-1), a key player in de ...
ORGANISM(S): Homo sapiens (Human) 
2024-11-14 | PXD050618 | Pride
Cell cycle Chromatin assembly Histone chaperones Epigenome stability Dna replication 
GenomicsSelection for improved energy efficiency and drought tolerance in canola results in distinct transcriptome and epigenome changes [ChIP-Seq]
Integrated breeding strategies are used to increase both the yield potential and stability of crops. Most of these approaches have a direct genetic basis. The utility of epigenetics in breeding to improve complex traits such as yield and stress tolerance is not clear. A better understanding of th...
ORGANISM(S): Brassica napus 
2015-06-28 | E-GEOD-65571 | biostudies-arrayexpress
TranscriptomicsSelection for improved energy efficiency and drought tolerance in canola results in distinct transcriptome and epigenome changes [RNA-Seq]
Integrated breeding strategies are used to increase both the yield potential and stability of crops. Most of these approaches have a direct genetic basis. The utility of epigenetics in breeding to improve complex traits such as yield and stress tolerance is not clear. A better understanding of th...
ORGANISM(S): Brassica napus 
2015-06-28 | E-GEOD-65572 | biostudies-arrayexpress
UnknownHistone deacetylase-1 is required for epigenome stability in Neurospora crassa.
Not available
S-EPMC11785058 | biostudies-literature
ProteomicsFunctional landscape of ubiquitin linkages couples K29-linked ubiquitylation to epigenome integrity
Linkage-specific ubiquitin chains govern the outcome of numerous critical ubiquitin-dependent signaling processes. However, the targets and functional impacts of linkage-specific ubiquitin modifications remain incompletely understood, due to a paucity of tools for their specific detection and manipu...
ORGANISM(S): Homo sapiens (Human) 
2025-10-21 | PXD056564 | Pride
K29 Epigenome maintenance Trip12 Ubiquitylation 
UnknownHigh Stability of the Epigenome in Drosophila Interspecific Hybrids.
Not available
S-EPMC8872975 | biostudies-literature
UnknownHISTONE DEACETYLASE-1 is required for epigenome stability in <i>Neurospora crassa</i>.
Not available
S-EPMC12519133 | biostudies-literature
GenomicsEpigenome characterization at single base-pair resolution
We have combined standard micrococcal (MNase) digestion of nuclei with a modified protocol for construction paired-end DNA sequencing libraries to map both nucleosomes and subnucleosome-sized particles at single base-pair resolution throughout the budding yeast genome. We found that partially unwrap...
ORGANISM(S): Saccharomyces cerevisiae 
2011-10-26 | E-GEOD-30551 | biostudies-arrayexpress
TranscriptomicsMethylation profiling of Arabidopsis mutant reveals transgenerational stability of the arabidopsis epigenome is coordinated by CG methylation
Maintenance of CG methylation (mCG) patterns is essential for chromatin-mediated epigenetic regulation of transcription in plants and mammals. Using successive generations of an Arabidopsis thaliana mutant deficient in maintaining mCG, we found that mCG loss triggered genome-wide activation of alter...
ORGANISM(S): Arabidopsis thaliana 
2008-06-16 | E-GEOD-8279 | biostudies-arrayexpress
Sort   by:  
 Page size