Epitranscriptome

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Unknown (295)
Genomics (278)
Transcriptomics (121)
Other (64)
Proteomics (22)
Methylation profiling (19)
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Homo sapiens (114)
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synthetic construct (5)
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Human immunodeficiency virus (1)
Magallana gigas (1)
Petunia x hybrida (1)
human gammaherpesvirus 4 (1)

Organisms

Homo sapiens (97)
Mus musculus (48)
Arabidopsis thaliana (6)
Thermococcus kodakarensis (5)
Pyrococcus furiosus (2)
Pinus pinaster (2)
Pseudomonas aeruginosa UCBPP-PA14 (2)
Aspergillus fumigatus (2)
Pseudomonas aeruginosa (2)
Rattus norvegicus (2)
Toxoplasma gondii (2)
Saccharomyces cerevisiae (2)
synthetic construct (2)
Thermoplasma acidophilum (1)
Planococcus halocryophilus (1)
Pyrodictium abyssi (1)
Human immunodeficiency virus (1)
Petunia x hybrida (1)
Escherichia coli str. K-12 substr. MG1655 (1)
Haloferax volcanii (1)
human gammaherpesvirus 4 (1)
Acetivibrio thermocellus (1)
Magallana gigas (1)
Sulfolobus acidocaldarius (1)
Influenza A virus (1)
Chlorocebus sabaeus (1)
Schizosaccharomyces pombe (1)
Salmonella enterica (1)
Human immunodeficiency virus 1 (1)
Escherichia coli K-12 (1)

Repository

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geo (209)
pride (19)
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Tissue

Cell culture (3)
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Disease

Hepatocellular carcinoma (2)
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Prostate carcinoma (1)

Technology Type

Mass Spectrometry (19)
Shotgun proteomics (10)
Affinity purification coupled with mass spectrometry proteomics (3)
Bottom-up proteomics (3)
Mass spectrometry (2)
Data-dependent acquisition (2)
SRM/MRM (2)
Gel-based experiment (1)
RNA mass spectrometry (1)
SWATH MS (1)

Instrument Platform

Illumina MiSeq (2)
Liquid Chromatography MS - positive - reverse phase (2)
Illumina HiSeq 2500 (1)
NextSeq 500 (1)

Publication Date

2025 (58)
2024 (51)
2026 (30)
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2023 (22)
2021 (21)
2018 (8)
2017 (7)
2012 (4)
2020 (4)
2016 (3)
2019 (2)
2014 (2)

CHEBI ID

CHEBI:16750 (2)
CHEBI:16335 (2)
CHEBI:16704 (2)
CHEBI:20480 (1)
CHEBI:20597 (1)
CHEBI:20598 (1)
CHEBI:62005 (1)
CHEBI:19068 (1)
CHEBI:19229 (1)
CHEBI:20794 (1)
CHEBI:19227 (1)
CHEBI:25294 (1)
CHEBI:16040 (1)
CHEBI:20607 (1)
CHEBI:17802 (1)
CHEBI:17562 (1)
CHEBI:21891 (1)
CHEBI:16020 (1)
CHEBI:17596 (1)

Metabolite Name

Guanosine (2)
5-carbamoylmethyluridine (1)
5-methoxycarbonylmethyl-2-thiouridine (1)
2'-O-methyluridine (1)
5-methoxycarbonylmethyluridine (1)
7-methylguanosine (1)
1-methylpseudouridine (1)
5-methylcytidine (1)
4-thiouridine (1)
2'-O-methylguanosine (1)
2'-O-methylcytidine (1)
Uridine (1)
Pseudouridine (1)
Inosine (1)
Cytidine (1)
Adenosine (1)
Uracil (1)
1-methyladenosine (1)
N6-methyladenosine (1)
Adenosine (1)
Cytosine (1)

First Public Date

2025 (66)
2024 (58)
2026 (39)
2022 (28)
2021 (24)
2023 (17)
2018 (9)
2017 (9)
2020 (3)
2019 (3)
2013 (2)
2016 (1)
2014 (1)

Classification

bacteria (8)
viruses (4)
protozoa (3)
fungi (2)

Study type

RNA-seq of coding RNA (5)
RIP-seq (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of total RNA (1)

Release Date

2022 (51)
2025 (45)
2023 (43)
2024 (40)
2021 (35)
2020 (22)
2019 (19)
2018 (16)
2026 (11)
2016 (7)
2017 (5)
2014 (3)
2012 (3)
2015 (2)
2013 (1)

Lab affiliation

Massachusetts Institute of Technology (2)
Basic Forestry and Proteomics Research Center (1)
Cancer Epigenetics Group, Josep Carreras Leukaemia Research Institute, 08916, Badalona, Barcelona, Catalonia, Spain. (1)
Cancer Epigenetics Group, Josep Carreras Leukaemia Research Institute, 08916, Badalona, Barcelona, Catalonia, Spain (1)
Department for Molecular and Applied Microbiology, Leibniz Institute for Natural Product Research and Infection Biology - Hans Knöll Institute Jena (Leibniz-HKI), Jena, Germany (1)
Department of Cell- and Developmental Biology, Center for Anatomy and Cell Biology, Medical University of Vienna, Austria (1)
European Molecular Biology Laboratory, Meyerhofstrasse 1, 69117 Heidelberg, Germany. (1)
Head of Laboratory of Epitranscriptomics Faculty of Biology, Biological and Chemical Research Centre, University of Warsaw, Poland (1)
Helmholtz Centre for Infection Research Dept. of Molecular Bacteriology Inhoffenstr. 7 D-38124 Braunschweig Germany (1)
Institut Pasteur (1)
Lab Head, UQ Diamantina Institute,The University of Queensland (1)
Life Sciences Institute, Zhejiang University (1)
MIT (1)
Proteomics Platform CIC bioGUNE, Bizkaia Tec. Park Build. 800, derio 48160 Bizkaia (Spain) (1)
Proteomics Service Bizakia Tech. Park Build. 800 Derio 48160 (Spain) (1)
Tel Aviv University (1)
Underwood-Prescott Professor, Department of Biological Engineering, Massachusetts Institute of Technology, 77 Massachusetts Avenue, 56-731 Cambridge, MA 02139-4307 (1)
University of Malaga, Molecular Biology department, BIO-114 (1)

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Mouse retina m6A epitranscriptome

PRJNA749619 | ENA

Decoding the Escherichia coli epitranscriptome

PRJNA1132232 | ENA

Recent advances in the plant epitranscriptome.

Not available

S-EPMC9990323 | biostudies-literature

A Nanopore-Based HIV-1 Reference Epitranscriptome

PRJNA1403292 | ENA

neonatal and adult mouse retina m6A epitranscriptome [meRIP-seq]

PRJNA779630 | ENA

An HIV-1 Reference Epitranscriptome.

Not available

S-EPMC11838527 | biostudies-literature

The transcriptome and m6A-epitranscriptome during skeletal muscle differentiation

PRJNA748246 | ENA

Mouse retina m6A epitranscriptome

m6A epitranscriptome of postnatal day 6 mouse retina was sequenced using MeRIP-seq.

ORGANISM(S): Mus musculus

2022-12-03 | GSE180814 | GEO

Virus-induced codon-specific reprogramming to favor viral RNA translation

Recent evidence indicates that codon usage bias regulates gene expression. How viruses, such as the emerging mosquito-borne Chikungunya virus (CHIKV), express their genomes at high levels despite an enrichment in rare codons remains a puzzling question. Using ribosome footprinting, here we analysed ...

2025-06-16 | MTBLS2443 | MetaboLights

tRNA modification profiling reveals epitranscriptome regulatory networks in Pseudomonas aeruginosa.

Not available

S-EPMC12300143 | biostudies-literature

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