Sort   by:  
 Page size 
TranscriptomicsNotch targets in KC Drosophila cells
To identify genes upregulated in response to Notch signalling in KC cells. Keywords: Expression analysis at a single timepoint (30' after Notch activation) KC cells were obtained from Dr Martin Zeidler. Control versus Notch activated KC cells: mRNA was extracted from KC cells incubated in the absenc...
ORGANISM(S): Drosophila melanogaster 
2010-06-23 | E-GEOD-9965 | biostudies-arrayexpress
TranscriptomicsExpression analyses of inducible c-Fos expressing kerationcytes
Expression analyses comparing c-Fos expressing keratinocytes vs non-expressing controls. Skin squamous cell carcinomas (SCCs) are the second most prevalent skin cancers. Chronic skin inflammation has been associated with the development of SCCs, but the contribution of skin inflammation to SCC devel...
ORGANISM(S): Mus musculus 
2013-09-05 | E-GEOD-50621 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of human epidermal keratinocytes (NHEK) from neonatal foreskin treated with IL20 subfamily cytokines vs. controls suggests potential roles in cutaneous innate defense and pathogenic adaptive immunity in psoriasis
Normal human epidermal keratinocytes (NHEK) from neonatal foreskin were cultured in serum-free EpiLife medium with human KC growth supplement (0.2% bovine pituitary extract (v/v), 5ug bovine insulin, 5ug/ml bovine transferrin, 0.5ng/ml human EGF, and 0.18 ug/ml hydrocortisone) from Cascade Biologics...
ORGANISM(S): Homo sapiens 
2007-11-01 | E-GEOD-7216 | biostudies-arrayexpress
TranscriptomicsIntegrative responses to IL-17 and TNF-α in human keratinocytes account for key inflammatory pathogenic circuits in psoriasis
We sought to provide a comprehensive evaluation of the effects of TNF-α and IL-17 on the keratinocyte gene profile in order to identify genes that might be co-regulated by these cytokines. We then sought to determine how genes that were synergistically activated by both cytokines relate to the psori...
ORGANISM(S): Homo sapiens 
2010-11-24 | E-GEOD-24767 | biostudies-arrayexpress
TranscriptomicsGenome-wide expression erofiling of an in vitro model for studying esophageal epithelial differentiation
We used RNA sequencing to identify differentially expressed genes during esophageal epithelial differentiation and in the presence of interleukin 13 using an air-liquid interface culture system. RNA sequencing was performed on a human esophageal epithelial cell line (EPC2-hTERT) grown submerged (day...
ORGANISM(S): Homo sapiens 
2015-02-01 | E-GEOD-65335 | biostudies-arrayexpress
TranscriptomicsGenome-wide analysis of Botrytis cinerea genes targeting plant cell walls of different hosts [grape]
The cell wall is among the first plant structures encountered by necrotrophic fungal pathogens, such as Botrytis cinerea. The composition of plant cell walls varies depending on the species, type of cell or tissue, and stage of development. Cell walls are important reservoirs of energy-rich sugars f...
ORGANISM(S): Vitis vinifera 
2014-09-24 | E-GEOD-57587 | biostudies-arrayexpress
TranscriptomicsAltered Epigenetic Regulation of Homeobox Genes in Human Oral Squamous Cell Carcinoma Cells
To gain insight into the molecular changes during OSCC carcinogenesis, we performed unbiased, whole genome deep sequencing (RNA-seq) using RNA isolated from cultured, human TERT-immortalized, non-tumorigenic OKF6-TERT1R and OSCC SCC-9 cells. OKF6-TERT1R cells and SCC-9 cells were plated in 10 cm2 t...
ORGANISM(S): Homo sapiens 
2013-10-19 | E-GEOD-51415 | biostudies-arrayexpress
TranscriptomicsStudy of transcriptional effects of monosodium urate crystal (MSU) on HaCaT keratinocyte cell line.
Aim of the study was to characterize at a molecular level (changes in transcriptomes) the effect of monosodium urate crystal (MSU) on HaCaT keratinocyte cell line. This was adressed by using a culture model. The HaCaT cell line (human keratinocytes) was stimulated by MSU (1mg/mL) vs control for 12 h...
ORGANISM(S): Homo sapiens 
2015-10-29 | E-GEOD-65931 | biostudies-arrayexpress
TranscriptomicsGenomic Run On (GRO): determination of the nascent transcriptional rates in a spt16 mutant
We analyzed the effect of SPT16 on the transcription rates, mRNA stabilities and mRNA levels by doing GRO experiments in a thermosensitive spt16 point mutant (G132D) mutant at 35 ºC comparing with permisive temperature (30 ºC) and a wt treated in the same way. Cells (wt or spt16 mutant) were grown...
ORGANISM(S): Saccharomyces cerevisiae 
2016-01-05 | E-GEOD-64006 | biostudies-arrayexpress
TranscriptomicsUbiquitin-dependent turnover of MYC promotes loading of the PAF complex on RNA Polymerase II to drive transcriptional elongation (RNA-seq)
The MYC transcription factor is an unstable protein and its turnover is controlled by the ubiquitin system. Ubiquitination enhances MYC-dependent transactivation, but the underlying mechanism remains unresolved. Here we show that proteasomal turnover of MYC is dispensable for recruitment of RNA poly...
ORGANISM(S): Homo sapiens 
2016-01-04 | E-GEOD-70000 | biostudies-arrayexpress
Sort   by:  
 Page size