Eriksson P P - OmicsDI

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Unknown (1506)
Transcriptomics (51)
Proteomics (27)
Genomics (20)
Metabolomics (12)
Models (2)

Organisms

Homo sapiens (43)
Schizophyllum commune H4-8 (25)
Mycobacterium tuberculosis SP7 (25)
Salmonella enterica subsp. enterica serovar Typhimurium str. T000240 (25)
Oryza sativa Japonica Group (25)
Crotalus durissus terrificus (25)
Eriocheir sinensis (25)
Candidatus Endoriftia persephonae (25)
Mycobacterium tuberculosis SP10 (25)
Mycobacterium tuberculosis SP13 (25)
Cotesia typhae (25)
Mycobacterium tuberculosis SP22 (25)
Cepaea nemoralis (25)
Enterobacter ludwigii (25)
Trichoderma asperellum CBS 433.97 (25)
Corynebacterium diphtheriae bv. mitis str. ISS 3319 (25)
Nakaseomyces glabratus (25)
Olea europaea (25)
Chlamydomonas reinhardtii (25)
Mus musculus (9)
Sus scrofa (4)
Oncorhynchus mykiss (2)
Rattus norvegicus (2)
Shigella flexneri (1)
Salmonella enterica (1)
Yersinia pestis (1)
Populus tremula x Populus tremuloides (1)
Listeria monocytogenes (1)
Campylobacter jejuni (1)
Saccharomyces cerevisiae (1)

Organisms

Homo sapiens (2)

Repository

biostudies-arrayexpress (53)
pride (25)
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ENA (2)
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Tissue

Cell culture (4)
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Disease

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Technology Type

Mass Spectrometry (25)
Shotgun proteomics (21)
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ILLUMINA, Illumina HiSeq 2500 (1)
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Instrument Platform

Liquid Chromatography MS - negative - reverse phase (4)
Liquid Chromatography MS - positive - reverse phase (4)
Illumina NovaSeq 6000 (2)
Bruker (2)
Gas Chromatography MS - (2)
ScanArray 5000 [PerkinElmer] (1)
Affymetrix Fluidics Station 400 (1)
Q Exactive (1)
Agilent 6550 iFunnel Accurate-Mass UHPLC-QTOFMSMS (negative mode) (1)
Agilent 6550 iFunnel Accurate-Mass UHPLC-QTOFMSMS (positive mode) (1)
LECO Pegasus III, GCTOFMS (1)
Liquid Chromatography MS - positive - reverse phase - LTQ Orbitrap Velos (Thermo Scientific) (1)
Liquid Chromatography MS - negative - reverse phase - LTQ Orbitrap Velos (Thermo Scientific) (1)
Liquid Chromatography MS - (1)
Gas Chromatography MS - positive (1)
Nuclear Magnetic Resonance (NMR) - (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2016 (9)
2012 (9)
2020 (8)
2021 (7)
2010 (7)
2024 (6)
2019 (6)
2015 (6)
2023 (5)
2025 (5)
2018 (4)
2007 (4)
2014 (3)
2011 (3)
2009 (3)
2013 (2)
2017 (2)
2022 (2)
2008 (1)
2005 (1)

UNIPROT ID/AC

Q8CA95 (2)
P62137 (2)
Q9ERT9 (2)
P49615 (2)
Q6P1F6 (2)
P63330 (2)
Q60829 (2)
P63328 (2)
P48453 (2)
Q63810 (2)
Q63811 (2)
P48455 (2)
Q9DBC7 (2)
P12849 (2)
P68181 (2)
Q01063 (2)
P62204 (2)
P84309 (2)
P63213 (2)
P62874 (2)
B2RSH2 (2)
P05132 (2)
Q76MZ3 (2)
Q8CGK7 (2)
P61168 (1)
Q60613 (1)
P32211 (1)
Q61616 (1)

CHEBI ID

CHEBI:15428 (7)
CHEBI:27266 (6)
CHEBI:28044 (6)
CHEBI:70749 (5)
CHEBI:18183 (5)
CHEBI:30805 (5)
CHEBI:17992 (5)
CHEBI:28842 (5)
CHEBI:41865 (5)
CHEBI:17351 (5)
CHEBI:18089 (5)
CHEBI:15891 (5)
CHEBI:28867 (5)
CHEBI:18012 (5)
CHEBI:15756 (5)
CHEBI:27897 (5)
CHEBI:6650 (5)
CHEBI:16737 (5)
CHEBI:16919 (5)
CHEBI:28300 (5)
CHEBI:30915 (5)
CHEBI:16335 (4)
CHEBI:18243 (2)
CHEBI:17489 (2)
CHEBI:29108 (2)
CHEBI:15996 (2)
CHEBI:17552 (2)
CHEBI:16027 (2)
CHEBI:15422 (2)
CHEBI:15355 (1)

Metabolite Name

Cholic acid (4)
Valine (3)
Taurocholic acid (3)
Glycocholic acid (3)
Taurine (3)
Glycine (3)
Phenylalanine (3)
Glutamine (3)
Dodecanoic acid (2)
Aspartic acid (2)
Linoleic acid (2)
Ribitol (2)
Hippurate (2)
Methylsuccinic acid (2)
2-Methylglutaric acid (2)
Taurodeoxycholic acid (2)
Chenodeoxycholic acid (2)
Ethanolamine (2)
Sucrose (2)
Succinic acid (2)
Fumaric acid (2)
Myo-inositol (2)
Malic acid (2)
Benzoic acid (2)
Histidine (2)
Glycodeoxycholic acid (2)
Ursodeoxycholic acid (2)
Orotic acid (2)
Indoxyl sulfate (2)
Glycoursodeoxycholic acid (2)

First Public Date

2024 (1)
2019 (1)

Modelling Approach

Ordinary differential equation model (2)

Lab affiliation

Åbo Akademi University, Faculty of Science and Engineering, Finland (2)
Div. Clinical Protein Science & Imaging Clinical Sciences & Biomedical Engineering Lund University Sweden (1)
University of Groningen, Department of Analytical Biochemistry, Groningen Research Institute of Pharmacy, Antonius Deusinglaan 1, 9713 AV, Groningen, The Netherlands. (1)
Zoonosis Science Center, Department of Medical Sciences, Uppsala University, Uppsala SE-75185, Sweden (1)
Department of Oncology and Pathology, Karolinska Institute; Science for Life Laboratory, Stockholm, Sweden (1)
University of Jyväskylä Department of Biological and Environmental Science (1)
Turku Centre for Biotechnology University of Turku Tykistokatu 6 FI-20520 Turku, Finland (1)
Turku Proteomics Facility, Turku Bioscience (1)
Unit of Proteomics- Centro Cardiologico Monzino IRCCS (1)
Department of Oncology and Pathology. Karolinska Institutet and Scilifelab, Stockholm, Sweden (1)
Principal investigator at Lund University (1)
Science for Life Laboratory; Department of Oncology Pathology, Karolinska Institute, Stockholm, Sweden (1)
Division of Rheumatology, Department of Medicine Solna, Karolinska Institutet, Karolinska University Hospital, Stockholm, Sweden (1)
Dept. Oncology Pathology, Karolinska Institutet, and Science for Life Laboratory, Stockholm, Sweden (1)
Department of Molecular Cell Biology, Institute for Cancer Research, Oslo University Hospital, Oslo, Norway (1)
Oslo University Hospital Neuroscience Research Unit Domus Medica 4, 2nd floor, room L-268 Gaustadalleen 34 0372 Oslo (1)
8Clinical Protein Science & Imaging, Biomedical Centre, Department of Biomedical Engineering, Lund University, Lund, Sweden (1)
Professor at Department of Pharmacy, Drug Delivery, Uppsala University (1)
Department of Oncology-Pathology, Karolinska Institutet and Science for Life Laboratory, Stockholm, Sweden (1)
Division of Clinical Protein Science & Imaging, Department of Clinical Sciences (Lund), Department of Biomedical Engineering, Lund University, Lund, Sweden (1)
Proteomics Core Facility, University of Gothenburg, Sweden (1)
University of Groningen, Department of Analytical Biochemistry, Groningen Research Institute of Pharmacy, Antonius Deusinglaan 1, 9713 AV Groningen, The Netherlands Lund University, Department of Biomedical Engineering, Lund, Sweden (1)
Dept. Oncology Pathology, Karolinska Institutet, and Scilifelab, Stockholm, Sweden (1)
Umea University (1)

IsPrivate

False (2)

Modification

N6-dimethyl-L-lysine (1)

Study type

Transcription profiling by array (40)
RNA-seq of coding RNA (3)
Cell line - One-color microarray (2)
Comparative genomic hybridization by array (2)
Methylation profiling by array (2)
Animal - One-color microarray (1)
ChIP-seq (1)
Proteomic profiling by array (1)
RNA-seq of total RNA (1)

Release Date

2022 (150)
2021 (132)
2024 (125)
2023 (118)
2020 (110)
2018 (110)
2025 (110)
2019 (100)
2016 (95)
2015 (92)
2017 (90)
2014 (73)
2012 (63)
2013 (54)
2011 (33)
2010 (33)
2009 (21)
2008 (15)
2026 (11)
2007 (10)
2003 (5)
2006 (4)
1998 (2)
2005 (1)
2004 (1)
1999 (1)

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Diurnal gene expression in Populus wild type and lhy RNAi line 10

Previous studies have shown that a considerable proportion of the Arabidopsis genome cycles under circadian and/or diurnal conditions (Edwards et al., 2006 PMID: 16473970, Blaesing et al., 2005 PMID 16299223). It is likely that the correct phasing of gene expression plays an important role in improv...

ORGANISM(S): Populus tremula x Populus tremuloides

2018-03-13 | E-MTAB-4516 | biostudies-arrayexpress

Blood-brain barrier P-glycoprotein function in healthy subjects and Alzheimer's disease patients: effect of polymorphisms in the ABCB1 gene.

Not available

S-EPMC3483228 | biostudies-literature

Adjunctive Brexpiprazole and Functioning in Major Depressive Disorder: A Pooled Analysis of Six Randomized Studies Using the Sheehan Disability Scale.

Not available

S-EPMC6403084 | biostudies-literature

Structure and ion-release mechanism of P<sub>IB-4</sub>-type ATPases.

Not available

S-EPMC8880997 | biostudies-literature

Shifted Metabolic Bias in Livers of Mice Lacking Hepatocytic Thioredoxin Reductase-1 Protects Against Acetaminophen Toxicity

Genetic disruption of thioredoxin reductase 1 protects against acetaminophen (APAP) toxicity. To determine the role of the thioredoxin system on xenobiotic metabolism we challeneged wildtype and txnrd1liver-null mice with acetaminophen. Adult male wildtype and txnrd1 liver-null mice (C57BL6/J) were ...

ORGANISM(S): Mus musculus

2013-06-08 | E-GEOD-37874 | biostudies-arrayexpress

Prognostic factors for death after surgery for small intestinal neuroendocrine tumours.

Not available

S-EPMC6156160 | biostudies-literature

A simple and efficient transient transformation for hybrid aspen (Populus tremula × P. tremuloides).

Not available

S-EPMC3476444 | biostudies-literature

Molecular analysis of a laccase gene from the white rot fungus Pycnoporus cinnabarinus.

Not available

S-EPMC106228 | biostudies-literature

Systemic Human Neutrophil Lipocalin Associates with Severe Acute Kidney Injury in SARS-CoV-2 Pneumonia.