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Transcriptomics14028s araC RNA-Seq
We used RNA-seq to determine the effects of AraC and arabinose on RNA levels genome-wide in S. enterica. Wild-type or delta araC mutant cells were grown in both the presence and absence of 0.2% L-arabinose. RNA-Seq libraries from two independent biological replicate samples were sequenced for (i) wi...
ORGANISM(S): Salmonella enterica subsp. enterica serovar Typhimurium str. 14028s Wu 
2013-10-04 | E-MTAB-1901 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Pseudomonas putida wild type cells and lexA1 and lexA2 mutants after treatment with mitomcin C
The experiment try to elucidate the analysis of the genetic composition of P. putida lexA1 and lexA2 regulons in order to determine the possible relationships and overlaps between both networks. Gene expression patterns in DNA-damaged wild-type cells of P. putida, as well as in its lexA1 and lexA2 m...
ORGANISM(S): Pseudomonas putida 
2007-10-20 | E-MEXP-1187 | biostudies-arrayexpress
TranscriptomicsMG1655 araC arabinose transcription profiling
AraC is an Escherichia coli transcription factor that regulates genes in response to the presence/absence of arabinose. We used transcription profiling to determine RNA levels in Escherichia coli K-12 strain MG1655 and MG1655 delta araC grown either in the absence or the presence of arabinose. Thus,...
ORGANISM(S): Escherichia coli K-12 
2013-10-19 | E-MTAB-1916 | biostudies-arrayexpress
GenomicsSalmonella 14028s AraC ChIP-Seq
We mapped the genome-wide binding of C-terminally FLAG-tagged AraC in S. enterica subsp. enterica serovar Typhimurium strain 14028s using ChIP coupled with deep sequencing (ChIP-seq). We identified five putative target loci for AraC: upstream of araB/araC, araE, araJ, STM14_0178, and within sseD.
ORGANISM(S): Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 
2013-10-09 | E-MTAB-1915 | biostudies-arrayexpress
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