Ev - OmicsDI

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Unknown (17917)
Proteomics (2582)
Genomics (1686)
Metabolomics (800)
Transcriptomics (607)
Other (27)
Models (3)
Clinical (3)
Methylation profiling (3)

Organisms

Homo sapiens (595)
Mus musculus (279)
Rattus norvegicus (20)
Bos taurus (19)
Caenorhabditis elegans (10)
Daphnia pulex (9)
Arabidopsis thaliana (9)
synthetic construct (9)
Macaca mulatta (5)
Danio rerio (5)
cellular organisms (3)
Thalassiosira pseudonana CCMP1335 (3)
Ovis aries (3)
Canis lupus familiaris (3)
Apis mellifera (2)
Vitis vinifera (2)
Nicotiana attenuata (2)
Nicotiana benthamiana (2)
Lactococcus lactis (1)
Pseudomonas syringae (1)
Aeromonas veronii (1)
Phaseolus vulgaris (1)
Ciona intestinalis (1)
Toxoplasma gondii (1)
Fragilariopsis cylindrus (1)
Paracoccidioides brasiliensis (1)
Cricetulus griseus (1)
Oryza sativa Japonica Group (1)
Saccharomyces cerevisiae (1)
Drosophila melanogaster (1)

Organisms

Homo sapiens (622)
Mus musculus (278)
Sorghum halepense (24)
Populus deltoides (24)
Caenorhabditis elegans (19)
Rattus norvegicus (17)
Bos taurus (16)
Pseudomonas aeruginosa (11)
Arabidopsis thaliana (9)
Enterovirus A71 (7)
Nicotiana attenuata (5)
Sus scrofa (5)
Macaca mulatta (4)
Zea mays (4)
Danio rerio (4)
Enterovirus A (3)
Medicago truncatula (3)
Staphylococcus aureus (3)
Vitis vinifera (3)
mouse gut metagenome (3)
Phalaenopsis aphrodite (2)
Enterovirus D (2)
Caulobacter vibrioides (2)
Cricetulus griseus (2)
Schmidtea mediterranea (2)
Equus caballus (2)
Ovis aries (2)
Canis lupus familiaris (2)
Escherichia coli (2)
Capra hircus (2)

Repository

pride (2059)
ENA (1438)
MetaboLights (741)
geo (669)
PeptideAtlas (281)
biostudies-arrayexpress (204)
MassIVE (117)
iProX (83)
GNPS (40)
jPOST (36)
NODE (11)
PanoramaPublic (9)
MetabolomicsWorkbench (8)
EGA (6)
BioModels (3)
GPMDB (2)
ExpressionAtlas (1)

Tissue

Cell culture (410)
Blood plasma (131)
Brain (117)
Epithelial cell (117)
Liver (59)
Permanent cell line cell (56)
Blood (53)
Blood serum (49)
Leaf (47)
Extracellular vesicle (43)
T cell (37)
Lung (36)
Urine (35)
Stem cell (35)
Heart (34)
Cell suspension culture (34)
Fibroblast (33)
Macrophage (31)
Kidney (31)
Plant cell (29)
Mixture (5)
Cultured cells (4)
Leaf (4)
Root (4)
Solvent (4)
Blood (3)
Cell line (2)
Parasite (1)
Keratinocytes (1)
Others (1)

Disease

Breast cancer (67)
Disease free (52)
Colon cancer (31)
Acute leukemia (22)
Alzheimer's disease (18)
Brain glioblastoma multiforme (16)
COVID-19 (14)
Malignant neoplasm of ovary (13)
Prostate adenocarcinoma (12)
Cardiovascular system disease (12)
Parkinson's disease (12)
Brain cancer (11)
Glioblastoma (11)
Cervix carcinoma (9)
Wounds and Injuries (9)
Multiple sclerosis (8)
Melanoma (8)
Type 2 diabetes mellitus (8)
Multiple myeloma (7)
Pancreatic ductal adenocarcinoma (7)
Neuroblastoma (7)
Malaria (6)
Lung cancer (6)
Not Available (2)
Cancer (2)
Embryonic lethal at day 8.5 to 9.5 (1)
Metarhizium anisopliae infected (1)
Ulcerative colitis (1)
Metastatic colorectal cancer treated with FOLFOXIRI (1)
Colorectal cancer (1)

Technology Type

Mass Spectrometry (2067)
Shotgun proteomics (891)
Bottom-up proteomics (564)
Mass spectrometry (538)
Data-independent acquisition (323)
Data-dependent acquisition (260)
Mass spectrometry assay (201)
SWATH MS (111)
Affinity purification coupled with mass spectrometry proteomics (105)
Gel-based experiment (100)
Top-down proteomics (68)
DiaPASEF (62)
HDMSE (43)
MSE (37)
Chemical cross-linking coupled with mass spectrometry proteomics (33)
SRM/MRM (20)
All-ion fragmentation (19)
Affinity proteomics (10)
NMR spectroscopy (8)
ESI (7)
Immunopeptidomics (7)
Proteogenomics (4)
Glycoproteomics (2)
EI (1)
Olink affinity proteomics (1)
Metaproteomics (1)
Mass spectrometry imaging (1)

Instrument Platform

Q Exactive (25)
Orbitrap Fusion (22)
NextSeq 500 (9)
Illumina NovaSeq 6000 (7)
Illumina HiSeq 1500 (3)
Illumina HiSeq 2500 (3)
Illumina HiSeq 4000 (3)
Xevo G2-XS QTof (3)
DNBSEQ-G400 (2)
Illumina MiSeq (2)
NextSeq 550 (2)
Agilent 7890B GC with 5977A MSD (2)
QuantStudio 12K Flex (1)
MiRDeep2 and miRBase. v22 database (1)
HPC (1)
NEXTflex small RNA library preparation kit v4; TruSeq exome RNA library preparation kit (Illumina); High Sensitivity DNA ScreenTape D1000 (1)
QIAzol and miRNeasy micro kits; Bioanalyzer TapeStation 2100; Qubit microRNA assay (1)
DNBSEQ-G50 (1)
QIAcube HT (1)
None (1)
Illumina HiScanSQ (1)
Unix (1)
GenePix Professional 4200A [Axon Instruments] (1)
G2565BA DNA microarray scanner [Agilent] (1)
NextSeq 1000 (1)
Illumina NovaSeq X (1)
- (1)
N/a (1)
Illumina HiSeq 1000 (1)
Illumina HiSeq 2000 (1)

Publication Date

2025 (761)
2026 (746)
2024 (465)
2023 (427)
2022 (351)
2021 (280)
2020 (216)
2019 (165)
2018 (126)
2017 (77)
2016 (67)
2014 (66)
2015 (50)
2013 (27)
2011 (24)
2012 (23)
2010 (17)
2007 (6)
2008 (4)
2009 (2)
2006 (2)
2005 (2)
2004 (1)
2027 (1)

UNIPROT ID/AC

F1RUN2 (279)
F1RII7 (276)
Q6QAQ1 (272)
P00355 (271)
C7AI81 (271)
P09571 (270)
F1RGX4 (269)
I3LK59 (267)
D0G7F6 (265)
P04246 (263)
F1RFY2 (262)
Q7SIB7 (258)
P02554 (258)
F1RKG8 (258)
F1SA70 (257)
P00346 (256)
I3LL80 (253)
A5A8V7 (253)
P04178 (252)
P00503 (252)
F1RII4 (252)
O02705 (251)
F1S8Y5 (250)
F1SRC5 (249)
F1S814 (249)
Q6RI85 (248)
I3L7U0 (248)
F1SR80 (248)
F1SDX9 (248)
F1SDR7 (248)

ENSEMBL ID

ENSSSCG00000030893 (4)
ENSG00000229353 (1)
ENSG00000170477 (1)

CHEBI ID

CHEBI:30769 (150)
CHEBI:15756 (146)
CHEBI:15741 (130)
CHEBI:15428 (129)
CHEBI:17234 (67)
CHEBI:28757 (50)
CHEBI:15366 (2)
CHEBI:30751 (2)
CHEBI:14575 (1)
CHEBI:23008 (1)
CHEBI:17158 (1)
CHEBI:15379 (1)
CHEBI:16812 (1)
CHEBI:16982 (1)
CHEBI:15688 (1)
CHEBI:16444 (1)
CHEBI:30089 (1)
CHEBI:15350 (1)
CHEBI:15351 (1)
CHEBI:15346 (1)
CHEBI:24996 (1)
CHEBI:18367 (1)
CHEBI:16236 (1)
CHEBI:15343 (1)
CHEBI:15361 (1)
CHEBI:15422 (1)
CHEBI:16761 (1)
CHEBI:16908 (1)
CHEBI:15846 (1)
CHEBI:32568 (1)

Metabolite Name

Hypoxanthine (133)
Adenosine (117)
Uracil (114)
Uridine (113)
Adenine (111)
Guanosine (107)
Creatinine (104)
Inosine (104)
Creatine (103)
Cytosine (96)
Taurine (92)
Guanine (91)
L-Phenylalanine (91)
Cytidine (89)
L-Tyrosine (85)
L-Proline (84)
Ornithine (84)
L-Histidine (84)
Sucrose (84)
L-Arginine (79)
Xanthine (79)
L-Lysine (77)
Citric acid (77)
Uric acid (77)
Glycine (75)
Thymine (75)
Phenylalanine (75)
Pantothenic acid (74)
Palmitic acid (74)
Leucine (73)

First Public Date

2025 (269)
2024 (206)
2026 (201)
2023 (157)
2021 (138)
2022 (108)
2019 (99)
2020 (91)
2018 (45)
2014 (43)
2017 (40)
2016 (20)
2015 (16)
2013 (5)

Modelling Approach

Ordinary differential equation model (3)

Study status

Completed (2)
Ongoing (1)

Lab affiliation

University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (12)
Head of the Curie Institute Mass Spectrometry Platform (9)
Instituto de Investigaciones Sanitarias de Santiago de Compostela (7)
Head of Proteomics (7)
1VIB-UGent Center for Medical Biotechnology, VIB, 9052 Ghent, Belgium 2Department of Biomolecular Medicine, Ghent University, 9052 Ghent, Belgium (5)
Brigham and Women's Hospital, Harvard Medical School (5)
School of Pharmacy, Sungkyunkwan University, South Korea (5)
Proteomics of Stem Cells and Cancer, German Cancer Research Center (DKFZ), Heidelberg, Germany (5)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, United States (5)
Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands (5)
Laboratory of Experimental Cancer Research, Department of Human Structure and Repair, Ghent University, Ghent, Belgium (4)
Vanderbilt University Proteomics Core (4)
Biochemistry and molecular biology department, Universidade Federal de Goias, Brazil (4)
University of Washington (4)
Fudan University (4)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (4)
Zhejiang University (4)
Laboratory of Microbiology Oceanography, State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, State Key Laboratory of Ocean Engineering, Shanghai Jiao Tong University, School of Oceanography, Shanghai JiaoTong University (4)
Utrecht University (4)
The University of Melbourne (4)
Department of Cell & Developmental Biology, University of California, San Diego, La Jolla, CA (3)
Dept. Oncology-Pathology, Scilifelab, Karolinska Institutet, Sweden (3)
Novo Nordisk Foundation Center for Basic Metabolic Research, University of Copenhagen (3)
UFIEC, Chronic Disease Programme, Functional Proteomics Unit, Instituto de Salud Carlos III (3)
Department of Chemistry & Bioscience Aalborg University Denmark (3)
Proteomics and Metabolomics Unit, Monzino Cardiologic Center, IRCCS, Milan, Italy (3)
Research Centre for Genetic Engineering and Biotechnology “Georgi D Efremov”, Macedonian Academy of Sciences and Arts, Skopje, Krste Misirkov 2, 1000 Skopje, Republic of North Macedonia (3)
Head of System Biology Lab. at Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, Russia (3)
MS Omics, Biohub Chicago, USA (3)
Federal University of Goias (3)

Keyword

Fluorouracil (1)

IsPrivate

False (3)

Classification

bacteria (24)
viruses (15)
helminths (2)
protozoa (2)
fungi (1)

Modification

4-tetrahydrothiazine-3-carboxylic acid (4)
Not available (3)
2x(15)N labeled L-lysine (2)
4x(15)N labeled L-arginine (2)
4x(2)H labeled dimethylated residue (1)
57.02146 (1)
15.99491 (1)

Study type

Transcription profiling by array (101)
RNA-seq of coding RNA (45)
ChIP-seq (9)
RNA-seq of non coding RNA (8)
Unknown experiment type (5)
Transcription profiling by tiling array (5)
Transcription profiling by RT-PCR (5)
High-throughput sequencing (4)
RNA-seq of total RNA (4)
ChIP-chip by tiling array (3)
MicroRNA profiling by high throughput sequencing (3)
Genotyping by array (2)
MicroRNA profiling by array (2)
DNA-seq (2)
Interventional (2)
MicroRNA profiling by high-throughput sequencing (1)
Human - One-color microarray (1)
Cell line - High-throughput sequencing (1)
Bisulfite-seq (1)
Comparative genomic hybridization by array (1)
Methylation profiling by high throughput sequencing (1)
Observational (1)

Release Date

2025 (2310)
2022 (2239)
2023 (2140)
2021 (1986)
2024 (1853)
2020 (1577)
2019 (1114)
2018 (924)
2017 (706)
2016 (676)
2015 (532)
2014 (395)
2026 (358)
2013 (268)
2012 (218)
2011 (187)
2010 (153)
2009 (120)
2008 (100)
2006 (61)
2007 (57)
2005 (40)
2004 (21)
2003 (18)
2001 (17)
2000 (16)
2002 (15)
1999 (9)
1998 (9)
1997 (2)

Location

Italy (3)

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Amplicon Sequencing of gRNAs from Brunello CRISPR mutagenized A549 and U87-MG cells after live/dead selection with EV-D68 IL

With the near eradication of poliovirus due to global vaccination campaigns, attention has shifted to other enteroviruses that can cause polio-like paralysis syndrome (now termed acute flaccid myelitis (AFM)). In particular, enterovirus D68 (EV-D68) is believed to be the main driver of epidemic outb...

ORGANISM(S): Homo sapiens

2025-02-25 | E-MTAB-14765 | biostudies-arrayexpress

Metabolomic Analysis Reveals an Important Role of Sphingosine 1-phosphate in the Development of HFMD due to EV-A71 Infection

Hand, foot, and mouth disease (HFMD) is a serious pediatric infectious disease that causes immeasurable physical and mental health burdens. Currently, there is a lack of information on the mechanisms of HFMD severity and early diagnosis. We performed metabolomic profiling of sera from 84 Enterovi...

2024-11-14 | MTBLS11656 | MetaboLights

Metabolomics Analysis of HOG-EV and HOG-R132H Cells with and without BAY 2402234 Treatment

Not available

ORGANISM(S): Homo sapiens

ST002231 | MetabolomicsWorkbench

Yersinia pestis EV NIIEG

Yersinia pestis EV NIIEG Genome sequencing

PRJNA234351 | ENA

Populus deltoides cultivar:EV

Populus deltoides EV transcriptome - EV A3 leaf

PRJNA520078 | ENA

Populus deltoides cultivar:EV