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TranscriptomicsTranscriptomic responses of Atlantic salmon (Salmo salar) to environmental enrichment during juvenile rearing
Captive rearing programs (hatcheries) are often used in conservation and management efforts for at-risk salmonid fish populations. However, hatcheries typically rear juveniles in environments that contrast starkly with natural conditions, which may lead to phenotypic and/or genetic changes that adve...
ORGANISM(S): Salmo salar 
2014-12-10 | E-GEOD-63982 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Arabidopsis mutant REVOLUTA (HDZIPIII) to identify downstream targets
The establishment of ad/abaxial polarity is a fundamental event in plant development. It is critical for correct polar development of the leaf (the upper portion of the leaf is chloroplast rich and optimized for light capture while the lower portion is optimized for gas exchange) and for creating a...
ORGANISM(S): Arabidopsis thaliana 
2008-06-15 | E-GEOD-7003 | biostudies-arrayexpress
TranscriptomicsTranscriptional profiling of a slyA mutant and a slyA-overexpression strain of Escherichia coli MG1655 in order to elucidate the SlyA regulon
A microarray study was performed to identify the Escherichia coli SlyA regulon. The wild-type (parental) Escherichia coli MG1655 strain was compared to an isogenic slyA deletion mutant, whilst a slyA-overexpression strain (in pET28a) was compared to an empty (pET28a) vector control. Continuous chemo...
ORGANISM(S): Escherichia coli str. K-12 substr. MG1655 
2017-01-25 | E-MTAB-5220 | biostudies-arrayexpress
TranscriptomicsTranscription profiling by array of E. coli steady-state cultures grown at different aerobiosis levels
E. coli steady-state cultures were grown at different aerobiosis levels; transcriptomic profiling was carried out of these cultures to measure oxygen-dependent gene expression using a reference-design microarray format.
ORGANISM(S): Escherichia coli 
2010-12-15 | E-MTAB-285 | biostudies-arrayexpress
UnknownClinical and Genomic Characterization of Treatment-Emergent Small-Cell Neuroendocrine Prostate Cancer: A Multi-institutional Prospective Study.
Not available
S-EPMC6366813 | biostudies-literature
TranscriptomicsE. coli Anaerobic/aerobic transitions in chemostat
Gene-expression measurements were made over a 20 minute time course as steady state E. coli cells were subjected to an anaerobic to aerobic or an aerobic to anaerobic environmental change.
ORGANISM(S): Escherichia coli 
2012-07-17 | E-MTAB-996 | biostudies-arrayexpress
TranscriptomicsFNR- vs WT in anoxic conditions
Salmonella enterica var. Typhimurium (S. Typhimurium) is a Gram-negative, facultative intracellular pathogen that infects the intestinal tracts of humans and animals. In the host, S. Typhimurium encounters a wide range of oxygen concentrations going from oxic conditions in the stomach to near anoxic...
ORGANISM(S): Salmonella enterica subsp. enterica serovar Typhimurium 
2010-07-01 | E-GEOD-3657 | biostudies-arrayexpress
TranscriptomicsTranscriptional changes in Escherichia coli during a shift from fermentation to Trimethylamine-N-oxide (TMAO) respiration
Gene-expression measurements were made over a 24 h time course as fermentative steady state E. coli cells were subjected to a shift to TMAO respiration.
ORGANISM(S): Escherichia coli str. K-12 substr. MG1655 
2014-12-13 | E-MTAB-2784 | biostudies-arrayexpress
UnknownBacterial rhomboid proteases mediate quality control of orphan membrane proteins
Not available
S-SCDT-EMBOJ-2019-102922 | biostudies-other
UnknownNERO: a biomedical named-entity (recognition) ontology with a large, annotated corpus reveals meaningful associations through text embedding.
Not available
S-EPMC8528865 | biostudies-literature
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