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ProteomicsComparative proteomic analysis of exosomes derived from endothelial cells and Schwann cells
Exosomes derived from endothelial cells and Schwann cells have been employed as novel treatments of neurological diseases, including peripheral neuropathy. Exosomal cargo plays a critical role in mediating recipient cell function. In this study, we thus performed a comprehensive proteomic analysis o...
ORGANISM(S): Mus musculus (Mouse) 
2023-08-20 | PXD041547 | Pride
Proteomics Exosomes Endothelial cells Protein Schwann cells 
UnknownMolecular Modeling the Proteins from the exo-xis Region of Lambda and Shigatoxigenic Bacteriophages.
Not available
S-EPMC8614690 | biostudies-literature
TranscriptomicsLoqs-PD and R2D2 define independent pathways for RISC generation in Drosophila
In Drosophila, siRNAs are classified as endo- or exo-siRNAs based on their origin. Both are processed from double-stranded RNA precursors by Dcr-2, then loaded into the Argonaute protein Ago2. While exo-siRNAs serve to defend the cell against viruses, endo-siRNAs restrict the spread of selfish DNA i...
ORGANISM(S): Drosophila melanogaster 
2011-02-10 | E-GEOD-26230 | biostudies-arrayexpress
TranscriptomicsThe hub protein Loqs connects the miRNA and endo-siRNA pathways in mosquitos
Aedes aegypti mosquitoes vector several arboviruses of global health significance, including dengue viruses and chikungunya virus. RNA interference (RNAi) plays an important role in antiviral immunity, gene regulation and protection from transposable elements. Double-stranded RNA binding proteins (d...
ORGANISM(S): Aedes aegypti 
2015-04-08 | E-GEOD-65070 | biostudies-arrayexpress
ProteomicsRegulation of Trichoderma harzianum gene expression and protein production in submerged cultures with inactivated oomycete mycelium
The breakdown of oomycete necromass is an important source of organic matter for composting. How Trichoderma harzianum, an important composting fungus, regulates gene expression and produces exo-proteins for degradation of oomycete necromass is poorly understood, especially related to cellulose, an ...
ORGANISM(S): Trichoderma harzianum CBS 226.95 
2025-10-11 | PXD069347 | Pride
Cazymes Inactivated mycelium Pythium necromass Trichoderma harzianum 
ProteomicsComparative exo-proteomic analysis of Trichoderma antagonists induced by oomycete mycelium highlights diverse antagonism strategies
Plant-beneficial fungi from the genus Trichoderma (Hypocreales, Ascomycota) can control oomyceteous plant-pathogenic Pythium myriotylum (Peronosporales, Oomycota) and thus serve as bioeffectors for the eco-friendly products of crop protection. However, the underlying mechanisms of microbe-microbe in...
ORGANISM(S): Trichoderma asperellum CBS 433.97 Trichoderma virens Gv29-8 Hypocrea jecorina (strain QM6a) (Trichoderma reesei) Trichoderma atroviride IMI 206040 Trichoderma parepimyces Trichoderma guizhouense 
2024-07-19 | PXD051895 | Pride
Trichoderma Exo-proteins Hydrolyase Antagonism 
ProteomicsDynamic proteome of Nasonia vitripennis nymphal development reveals testis-specific regulation of orphan proteins
In this study, we present the first proteome-wide analysis of tissue-specific and developmental protein dynamics in Nasonia vitripennis nymphae with a particular focus on testis differentiation. We profiled protein abundance in heads, legs, and testes across four successive pupal stages, identifying...
ORGANISM(S): Nasonia vitripennis 
2026-04-23 | PXD073770 | Pride
Alpha fold Proteomics Hymenoptera Foldseek search 
GenomicsCharacterizing protein-DNA binding event subtypes in ChIP-exo data
Regulatory proteins associate with the genome either by directly binding cognate DNA motifs or via protein-protein interactions with other regulators. Each genomic recruitment mechanism may be associated with distinct motifs, and may also result in distinct characteristic patterns in high-resolution...
ORGANISM(S): Homo sapiens Saccharomyces cerevisiae 
2018-02-13 | GSE110502 | GEO
GenomicsSimplified ChIP-exo assays
Chromatin immunoprecipitation followed by deep sequencing (ChIP-seq) and its ultra-high resolution cousin ChIP-exo are methods that identify where proteins bind along any genome in vivo. ChIP-exo achieves near-base pair resolution by creating exonuclease stop sites just 5’ to where formaldehyde-indu...
ORGANISM(S): Saccharomyces cerevisiae Homo sapiens 
2018-08-17 | GSE110681 | GEO
GenomicsSimplified ChIP-exo assays II
Chromatin immunoprecipitation followed by deep sequencing (ChIP-seq) and its ultra-high resolution cousin ChIP-exo are methods that identify where proteins bind along any genome in vivo. ChIP-exo achieves near-base pair resolution by creating exonuclease stop sites just 5’ to where formaldehyde-indu...
ORGANISM(S): Mus musculus 
2018-08-17 | GSE114606 | GEO
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