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ProteomicsExtracellular polymeric substance degradation shapes microbial community diversity
Extracellular polymeric substances are degraded by extracellular enzymes purified from seawater communities. Formation of degradation products is measured over time in negative and positive mode with an Agilent 6546 QTOF
ORGANISM(S): Seawater Microbial Communities 
2024-11-15 | MSV000096428 | MassIVE
ProteomicsExtracellular polymeric substance degradation shapes microbial community diversity MS/MS
Extracellular polymeric substances are degraded by extracellular enzymes purified from seawater communities. Formation of degradation products is measured over time in negative and positive mode with an Agilent 6546 QTOF. MS2 Spectral data of degradation products that formed over time
ORGANISM(S): Seawater Microbial Communities 
2024-11-18 | MSV000096444 | MassIVE
ProteomicsProteomic analysis of extracellular polymeric substances from anaerobic Desulfovibrio vulgaris UR1
To investigate the Mechanism of enhanced U(VI) reduction efficiency through extracellular polymeric substances from Desulfovibrio vulgaris UR1 induced by mediating materials, this project employed proteomic analysis to explore the changes in the structure and function of extracellular proteins befor...
ORGANISM(S): Desulfovibrio Vulgaris 
2024-12-10 | PXD058721 |
ProteomicsP.aeruginosa - Whole organism, Biofilm, SC (Toyofuku,j_proteome_res,2012)
abundance based on Spectral counting, biofilm, Interaction consistency score: 7.2, Coverage: 31
ORGANISM(S): 208964 
2012-00-00 | 1231515390 | PAXDB
ProteomicsQuantitative Proteomic Analysis of Extracellular Matrix Extracted from Mono- and Dual-Species Biofilms of Fusobacterium nucleatum and Porphyromonas gingivalis
Background The Gram-negative bacteria Fusobacterium nucleatum and Porphyromonas gingivalis are associated with periodontitis and members of a complex microbial biofilm. The self-produced extracellular polymeric matrix (EPM) of biofilms generally consists of lipids, exopolysaccharides, nucleic acids...
ORGANISM(S): Porphyromonas gingivalis ATCC 33277 Fusobacterium nucleatum subsp. nucleatum ATCC 25586 
2017-03-16 | PXD004888 | Pride
Bacterial biofilms Label-free quantitative tandem mass spectrometry Fusobacterium nucleatum Extracellular polymeric matrix Proteomics. Porphyromonas gingivalis 
TranscriptomicsRNA-seq transcriptome profiling of the psychrophilic diatom Fragilariopsis cylindrus grown at 0 degree Celsius and two levels of salinity
The data set described here complements data available under accession number E-MTAB-5153. We performed bulk RNA-sequencing experiments to examine gene expression in the genome of the cold-adapted (psychrophilic) marine diatom Fragilariopsis cylindrus growing at 0 degree Celsius and salinity of 34 ...
ORGANISM(S): Fragilariopsis cylindrus 
2022-04-30 | E-MTAB-8665 | biostudies-arrayexpress
TranscriptomicsA microRNA network regulates proliferative timing and extracellular matrix synthesis during cellular quiescence in fibroblasts [mRNA]
Background: Although quiescence—reversible cell-cycle arrest—is a key part in the life history and fate of many mammalian cell types, the mechanisms of gene regulation in quiescent cells are poorly understood. We sought to clarify the role of microRNAs as regulators of the cellular functions of quie...
ORGANISM(S): Homo sapiens 
2012-12-05 | E-GEOD-42613 | biostudies-arrayexpress
Proteomics,MultiomicsPlasma proteome profiling discovers novel proteins associated with non-alcoholic fatty liver disease
Non-alcoholic fatty liver disease (NAFLD) affects 25% of the population and can progress to cirrhosis, where treatment options are limited. As the liver secrets most of the blood plasma proteins its diseases should affect the plasma proteome. Plasma proteome profiling on 48 patients with cirrhosis o...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
MSV000084333 | MassIVE
Proteomics,MultiomicsPlasma proteome profiling discovers novel proteins associated with non-alcoholic fatty liver disease
Non-alcoholic fatty liver disease (NAFLD) affects 25% of the population and can progress to cirrhosis, where treatment options are limited. As the liver secrets most of the blood plasma proteins, its diseases should affect the plasma proteome. Plasma Proteome Profiling of 48 patients with cirrhosis ...
ORGANISM(S): Mus Musculus (ncbitaxon:10090) 
MSV000084332 | MassIVE
TranscriptomicsBiofilm matrix regulation by Candida albicans Zap1
The Zap1 ChIP-chips were performed in a/alpha cell types using C-terminally Myc-tagged proteins and Myc antibodies. ChIPs were performed on 48 hour biofilm cells grown in Spider medium. Two biological replicates were performed, and normalized data is reported in matrix. Myc tagged strains were comp...
ORGANISM(S): Candida albicans 
2011-06-09 | E-GEOD-29785 | biostudies-arrayexpress
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