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TranscriptomicsTranscription profiling of S. pneumoniae D39, a serotype 2 strain of pneumococcus, with that of an isogenic deletion mutant, (delta)luxS, time series
We were interested in determining if the LuxS signaling system contributed to the regulation of pneumococcal genes. To accomplish this, we compared the in vitro transcriptional profiles over time of S. pneumoniae D39, a serotype 2 strain of pneumococcus, with that of an isogenic deletion mutant, (d...
ORGANISM(S): Streptococcus pneumoniae 
2005-07-21 | E-SMDB-2173 | biostudies-arrayexpress
TranscriptomicsComparative genomic hybridization of 26 serovars and strains of Salmonella spp. including many representatives of subspecies I, Arizona from subsp. IIIa, and S. bongori from subsp. V
This experiment set includes 64 arrays representing 26 serovars and strains of Salmonella spp. including many representatives of subspecies I, Arizona from subsp. IIIa, and S. bongori from subsp. V. The genomic DNA from all strains were labeled with Cy5 and hybridized against an equal amount (1.5 u...
ORGANISM(S): Salmonella enterica serovar Typhimurium 
2005-09-27 | E-SMDB-1624 | biostudies-arrayexpress
TranscriptomicsLuxS signaling system and regulation of pneumococcal genes
We were interested in determining if the LuxS signaling system contributed to the regulation of pneumococcal genes. To accomplish this, we compared the in vitro transcriptional profiles over time of S. pneumoniae D39, a serotype 2 strain of pneumococcus, with that of an isogenic deletion mutant, (d...
ORGANISM(S): Streptococcus pneumoniae 
2005-08-03 | E-GEOD-3046 | biostudies-arrayexpress
TranscriptomicsGenomic comparison of Salmonella enterica serovars and Salmonella bongori
This experiment set includes 64 arrays representing 26 serovars and strains of Salmonella spp. including many representatives of subspecies I, Arizona from subsp. IIIa, and S. bongori from subsp. V. The genomic DNA from all strains were labeled with Cy5 and hybridized against an equal amount (1.5 u...
ORGANISM(S): Salmonella enterica subsp. enterica serovar Typhimurium 
2005-11-03 | E-GEOD-3564 | biostudies-arrayexpress
TranscriptomicsComparative genomic hybridization of pre- and post-mouse H. pylori strains SS1 and SS2000
This experiment set contains the raw data for 8 arrays that were used in the genomic typing of the pre- and post-mouse H. pylori strains SS1 and SS2000. 10700 is the pre-mouse clinical isolate of SS1 and PMSS2000 is the pre-mouse clinical isolate of SS2000. gDNA from these strains were labeled and h...
ORGANISM(S): Helicobacter pylori 
2005-11-03 | E-SMDB-1734 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of S. typhimurium treated with bile
Bile treatment 30 and 60 minutes regulation of genes by PmrA and UblA, 30 and 60 minutes
ORGANISM(S): Salmonella enterica serovar Typhimurium 
2005-11-01 | E-SMDB-2621 | biostudies-arrayexpress
TranscriptomicsDetection of Transposon Mutants That Cannot Survive in Macrophages and Mice.
An all pairs experiment design type is where all labeled extracts are compared to every other labeled extract. We have adapted a microarray-based transposon tracking strategy for use with a Salmonella enterica serovar Typhimurium cDNA microarray in order to identify genes important for survival and ...
ORGANISM(S): Salmonella enterica subsp. enterica serovar Typhimurium 
2005-08-24 | E-GEOD-3179 | biostudies-arrayexpress
TranscriptomicsGenetic diversity among Helicobacter pylori strains
Helicobacter pylori colonizes the stomach of half of the world's population, causing a wide spectrum of disease ranging from asymptomatic gastritis to ulcers to gastric cancer. Although the basis for these diverse clinical outcomes is not understood, more severe disease is associated with strains ha...
ORGANISM(S): Helicobacter pylori 
2001-07-25 | E-GEOD-6 | biostudies-arrayexpress
UnknownCoagulase-Negative Staphylococci Pathogenomics.
Not available
S-EPMC6429511 | biostudies-literature
UnknownStreptococcus pneumoniae nasopharyngeal colonization induces type I interferons and interferon-induced gene expression.
Not available
S-EPMC2743716 | biostudies-literature
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