Fasta - OmicsDI

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Proteomics (4469)
Unknown (380)
Transcriptomics (353)
Genomics (254)
Metabolomics (5)
Models (1)
Methylation profiling (1)

Organisms

Homo sapiens (98)
Mus musculus (54)
Drosophila melanogaster (37)
Danio rerio (22)
Caenorhabditis elegans (20)
Arabidopsis thaliana (10)
Zea mays (9)
Saccharomyces cerevisiae (7)
Schizosaccharomyces pombe (6)
Gallus gallus (6)
Oryza sativa Japonica Group (5)
Gossypium hirsutum (4)
Bombyx mori (3)
Glycine max (3)
Sus scrofa (3)
Lemna minor (2)
Canna indica (2)
Oryza rufipogon (2)
Harpegnathos saltator (2)
Cucumis sativus (2)
Cucumis melo (2)
Brassica juncea (2)
Streptococcus thermophilus (2)
Macaca mulatta (2)
Prunus persica (2)
Daphnia magna (2)
synthetic construct (2)
Macaca fascicularis (2)
Listeria monocytogenes (2)
Salmonella enterica subsp. enterica serovar Typhimurium (2)

Organisms

Homo sapiens (16)
Mus musculus (15)
Drosophila melanogaster (8)
Arabidopsis thaliana (5)
Bos taurus (4)
Zea mays (3)
Giraffa tippelskirchi (2)
Saccharomyces cerevisiae (2)
synthetic construct (2)
Cryptotis parvus (1)
Hexactinellida sp. DTS-2022 (1)
Chrysodeixis includens (1)
Eleusine (1)
Camelus ferus (1)
Ceratotherium simum simum (1)
Actinidia zhejiangensis (1)
insect work metagenome (1)
Bacillus spizizenii str. W23 (1)
Perca fluviatilis (1)
Caulobacter vibrioides (1)
Alteromonas macleodii (1)
Dunaliella tertiolecta (1)
Triticum urartu (1)
Nekemias grossedentata (1)
Amblyomma americanum (1)
Camelus bactrianus (1)
Gadus morhua (1)
Komagataella phaffii (1)
Myzus persicae (1)
Sindbis virus (1)

Repository

pride (4412)
biostudies-arrayexpress (389)
ENA (183)
MassIVE (45)
geo (19)
EGA (17)
iProX (9)
GNPS (5)
jPOST (2)
NODE (2)
BioModels (1)

Tissue

Cell culture (938)
Epithelial cell (265)
Brain (259)
Blood plasma (171)
Liver (165)
Permanent cell line cell (159)
Blood (97)
Fibroblast (90)
Blood serum (86)
Kidney (85)
Lung (84)
Heart (82)
Leaf (82)
Macrophage (70)
Blood cell (69)
Plant cell (68)
Skin (62)
Colon (61)
Stem cell (61)
Hepatocyte (57)
Embryonic stem cell (55)
Whole body (53)
T cell (52)
Bone marrow (49)
Cell suspension culture (49)
HeLa cell (49)
Primary cell (45)
B cell (40)
Embryo (36)
Sediment (1)

Disease

Disease free (104)
Breast cancer (102)
Colon cancer (81)
Acute leukemia (65)
Alzheimer's disease (40)
Cervix carcinoma (38)
Cardiovascular system disease (27)
Type 2 diabetes mellitus (26)
Wounds and Injuries (22)
Brain cancer (21)
Parkinson's disease (21)
Malignant neoplasm of ovary (20)
Melanoma (19)
COVID-19 (18)
Influenza (18)
Severe acute respiratory syndrome (15)
Amyotrophic lateral sclerosis (14)
Prostate adenocarcinoma (14)
Malaria (13)
Pancreatic cancer (13)
Pancreatic ductal adenocarcinoma (13)
Acute myeloid leukemia (11)
Lymphoma (11)
Non-small cell lung carcinoma (11)
Obesity (11)
Plasmodium falciparum malaria (11)
Multiple sclerosis (9)
Lung cancer (8)
Celiac disease (7)
Glioblastoma (7)

Technology Type

Mass Spectrometry (4412)
Shotgun proteomics (2076)
Bottom-up proteomics (1147)
Data-independent acquisition (593)
Data-dependent acquisition (545)
Affinity purification coupled with mass spectrometry proteomics (443)
SWATH MS (241)
Gel-based experiment (170)
Top-down proteomics (122)
Chemical cross-linking coupled with mass spectrometry proteomics (114)
DiaPASEF (65)
All-ion fragmentation (44)
HDMSE (35)
SRM/MRM (34)
MSE (23)
Affinity proteomics (15)
Mass spectrometry imaging (12)
Immunopeptidomics (11)
Metaproteomics (11)
Proteogenomics (8)
Glycoproteomics (3)
PAcIFIC (1)
RNA mass spectrometry (1)

Instrument Platform

Illumina NovaSeq 6000 (28)
Illumina HiSeq 4000 (23)
NextSeq 500 (13)
Illumina HiSeq 2500 (9)
Illumina HiSeq 2000 (7)
Illumina MiSeq (3)
NextSeq 550 (3)
Maxwell RSC instrument (1)
Maxwell RSC Instrument (1)
Dell Precision Tower 7910 workstation (1)
Affymetrix GCS3000 7G SCANNER (1)
GeneChip Hybridization Oveer 640 (1)
MiRNeasy Serum/Plasma Advanced Kit (1)
DNA Genotek collection tubes (Ref CP-190) (1)
Bio-Rad T100 Thermocycler (1)
AB 310 Genetic Analyzer (1)
R software (1)
Nf-core pipeline (1)
Illumina DNA Tagmentation (1)
Arcturus PicoPure (1)
Miltenyi Biotec (cat no. 130-096-730) ,Fortessa X-20 flow cytometer (BD Biosciences) (1)
454 GS Junior (1)
Sequel (1)
Illumina Genome Analyzer (1)
Illumina Genome Analyzer II (1)
Illumina NovaSeq X Plus (1)
Ion Torrent PGM (1)
Illumina (1)
NextSeq 2000 (1)
Illumina HiSeq 1500 (1)

Publication Date

2025 (878)
2026 (744)
2024 (556)
2023 (505)
2022 (471)
2021 (425)
2020 (284)
2019 (243)
2018 (169)
2016 (134)
2015 (123)
2017 (115)
2014 (69)
2012 (52)
2013 (50)
2011 (25)
2010 (25)
2009 (8)
2008 (3)
2006 (1)

IsPrivate

False (1)

Submitter Keywords

FAIR-AIML (1)
Machine Learning Model (1)

First Public Date

2025 (24)
2024 (21)
2023 (17)
2013 (17)
2026 (16)
2021 (16)
2022 (15)
2017 (15)
2019 (12)
2020 (11)
2018 (7)
2016 (6)
2014 (4)
2015 (2)

Classification

bacteria (2)
fungi (1)
viruses (1)
protozoa (1)

Modelling Approach

Machine learning (1)

Modification

2x(15)N labeled L-lysine (7)
4x(15)N labeled L-arginine (6)
N6 (6)
15.994915 (2)
57.021464 (2)
N6-dimethyl-L-lysine (2)
Not available (2)
-17.026549 (1)
-18.010565 (1)
0.984 (1)
0.984016 (1)
14.01565 (1)
15.99491 (1)
19.989829 (1)
28.0313 (1)
3.994915 (1)
4 (1)
4-tetrahydrothiazine-3-carboxylic acid (1)
42.010565 (1)
43.00581 (1)
4x(2)H labeled dimethylated residue (1)
57.02146 (1)

Study type

RNA-seq of coding RNA (175)
RNA-seq of non coding RNA (104)
ChIP-seq (37)
Other (12)
DNA-seq (9)
Transcription profiling by array (8)
RNA-seq of coding RNA from single cells (8)
Animal - High-throughput sequencing (6)
Methylation profiling by high throughput sequencing (4)
RNA-seq of total RNA (4)
Transcription profiling by SAGE (3)
Cell line - High-throughput sequencing (3)
Genotyping by array (3)
Human - High-throughput sequencing (2)
High-throughput sequencing (2)
ATAC-seq (2)
Ribo-seq (2)
Cell line - Single-cell sequencing (1)
Animal - Single-cell sequencing (1)
Comparative genomic hybridization by array (1)
CUT&RUN (1)

Release Date

2015 (74)
2022 (62)
2014 (62)
2012 (59)
2016 (58)
2023 (51)
2013 (50)
2021 (45)
2024 (38)
2025 (35)
2010 (33)
2011 (32)
2019 (29)
2020 (23)
2018 (23)
2017 (20)
2009 (17)
2008 (13)
2026 (11)
2007 (8)
2006 (6)
2003 (4)
2001 (4)
2005 (3)
2004 (3)
2002 (3)
1998 (2)
2000 (1)

Lab affiliation

Staff Scientist Biological Systems & Engineering Division Lawrence Berkeley National Laboratory Berkeley CA 94720 (37)
Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands (35)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (34)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (28)
OncoProteomics Laboratory, Dept of Medical Oncology, VU University Medical Center, Amsterdam, The Netherlands (20)
DZNE Munich, Neuroproteomics, Feodor-Lynen Str. 17, 81377 Munich, Germany (11)
Functional Proteomics, ICR (11)
Professor of Genomic Evolution, School of Medicine, Conway Institute of Biomolecular and Biomedical Research, University College Dublin Belfield Dublin 4 (11)
Donnelly Centre for Cellular and Biomolecular Research, Department of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada (10)
Professor of Molecular Physiology, Leiden Institute of Chemistry, Leiden University, The Netherlands (10)
Ruhr University Bochum, Germany (10)
Centre for Proteome Research, University of Liverpool, Liverpool, UK (8)
TIGEM (8)
The Institute of Cancer Research (8)
Centre for Applied Pharmacokinetic Research, School of Health Sciences, The University of Manchester, UK (7)
Department of Cellular & Molecular Physiology, Yale School of Medicine, New Haven, CT 06520, USA. Systems Biology Institute, Yale University, New Haven, CT 06516, USA (7)
Department of Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany (7)
Max Planck Institute of Biochemistry (7)
University of Oxford (7)
University of Washington (7)
Wellcome Trust Sanger Institute (7)
Biognosys AG (6)
CRUK Scotland Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (6)
Chromosome Segregation Laboratory The Francis Crick Institute Midland Road London NW1 1AT (6)
Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and BIOSS Centre for Biological Signalling Studies, University of Freiburg, 79104 Freiburg im Breisgau, Germany (6)
Department of Chemistry and Biomolecular Sciences, University of Ottawa, Canada (6)
Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA (6)
Farnusch Kaschani, Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (6)
Institute of Medical Microbiology, University of Zurich (6)
Max Planck Institute for Molecular Biomedicine Bioanalytical Mass Spectrometry Röntgenstr. 20 48149 Münster Germany (6)

5464 Results

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