Felix M M - OmicsDI

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Unknown (1411)
Proteomics (198)
Transcriptomics (120)
Genomics (47)
Metabolomics (14)
Models (6)
Other (2)

Organisms

Aerococcus urinae NBRC 15544 = CCUG 36881 (183)
Allexis (183)
Canis lupus familiaris (183)
Carya cathayensis (183)
Clostridioides difficile 630 (183)
Cyanophora paradoxa (183)
Homo sapiens (74)
Mus musculus (46)
Arabidopsis thaliana (12)
Drosophila melanogaster (6)
Saccharomyces cerevisiae (5)
Rhipicephalus microplus (3)
Haematobia irritans (3)
Bradyrhizobium japonicum (3)
Schizosaccharomyces pombe (3)
Lotus japonicus (2)
Solanum lycopersicum (2)
Caenorhabditis elegans (2)
Staphylococcus aureus (1)
Dermacentor andersoni (1)
Arabidopsis lyrata (1)
Equus caballus (1)
Zea mays (1)
Anopheles gambiae (1)
Pseudomonas aeruginosa (1)
Escherichia coli (1)
Gallus gallus (1)
Sus scrofa (1)
Danio rerio (1)
Bos taurus (1)

Repository

pride (183)
biostudies-arrayexpress (149)
EGA (17)
MassIVE (11)
MetaboLights (10)
BioModels (6)
GNPS (4)
GPMDB (2)
iProX (2)
jPOST (1)
PeptideAtlas (1)
ENA (1)

Tissue

Cell culture (37)
Epithelial cell (10)
Heart (10)
Liver (6)
Macrophage (5)
Brain (4)
Cholangiocyte (4)
Glomerular visceral epithelial cell (4)
T cell (4)
Blood plasma (3)
Pancreas (3)
Stem cell (3)
Whole body (3)
Blood (2)
Cell suspension culture (2)
Embryonic stem cell (2)
Fetal cardiomyocyte (2)
Fibroblast (2)
Gill (2)
Hepatocyte (2)
Oligodendrocyte precursor cell (2)
Permanent cell line cell (2)
Regular cardiac myocyte (2)
Tear (2)
Abdominal adipose tissue (1)
Blood cell (1)
Blood serum (1)
Bone (1)
HuH-7-Lunet cell (1)
Schwann cell (1)

Disease

Cholangiocarcinoma (4)
Lysosomal storage disease (4)
Polycystic liver disease (4)
Cervix carcinoma (3)
Disease free (3)
Primary sclerosing cholangitis (3)
Not Available (2)
Breast cancer (2)
COVID-19 (2)
Cardiovascular system disease (2)
Lyme disease (2)
Metabolic dysfunction-associated steatotic liver disease (2)
Noonan syndrome (2)
Pancreatic ductal adenocarcinoma (2)
Prostate adenocarcinoma (2)
Alzheimer's disease (1)
Uninfected 11dpi (1)
Allergic asthma (1)
Amyotrophic lateral sclerosis (1)
Brain cancer (1)
Brain glioblastoma multiforme (1)
Colorectal cancer (1)
Endometriosis of uterus (1)
Glioblastoma (1)
Heart failure (1)
Influenza (1)
Ischemia (1)
Keratoconus (1)
Mixed disorder as reaction to stress (1)
Multiple sclerosis (1)

Technology Type

Mass Spectrometry (183)
Shotgun proteomics (101)
Bottom-up proteomics (36)
Data-dependent acquisition (18)
Top-down proteomics (13)
Data-independent acquisition (12)
Mass spectrometry (10)
All-ion fragmentation (6)
Affinity purification coupled with mass spectrometry proteomics (5)
HDMSE (5)
Gel-based experiment (4)
SRM/MRM (4)
SWATH MS (4)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
ILLUMINA, Illumina HiSeq 2000 (1)
Illumina Genome Analyzer II (1)

Instrument Platform

Illumina HiSeq 2000 (9)
Illumina HiSeq 2500 (6)
Illumina NovaSeq 6000 (6)
Q Exactive (4)
Orbitrap Fusion Lumos (4)
Illumina HiSeq 4000 (3)
Liquid Chromatography MS - negative - reverse phase (3)
Liquid Chromatography MS - positive - reverse phase (3)
NextSeq 500 (2)
MicrOTOF-Q II (2)
Instrument (2)
Liquid Chromatography MS - negative - direct infusion (2)
MA900, Sony (1)
10x Chromium Controller (1)
Illumina Genome Analyzer Iix (1)
Illumina Genome Analyzer IIx (1)
418 [Affymetrix] (1)
Illumina NovaSeq X (1)
NextSeq 550 (1)
Illumina HiSeq 3000 (1)
LTQ FT (1)
MaXis (1)
MaXis II (1)
LTQ Orbitrap Elite (1)
Orbitrap Astral (1)
Q Exactive HF (1)
Q Exactive Plus (1)
TSQ Vantage (1)
Diode array detection MS - (1)
Direct infusion MS - negative (1)

Publication Date

2025 (39)
2022 (33)
2021 (30)
2020 (27)
2024 (25)
2023 (24)
2019 (23)
2015 (23)
2012 (19)
2026 (18)
2014 (16)
2011 (16)
2016 (15)
2010 (15)
2018 (14)
2013 (11)
2017 (9)
2007 (3)
2009 (2)
2008 (2)
2006 (1)

UNIPROT ID/AC

A0EQY3 (1)
A0JLQ7 (1)
A0PJC8 (1)
A0PJD7 (1)
A1A558 (1)
A1A596 (1)
A1E5T5 (1)
A1IGX7 (1)
A1L013 (1)
A1L0U3 (1)
A1L0U6 (1)
A1L317 (1)
A1L347 (1)
A1L366 (1)
A1L3B6 (1)
A1Z2X7 (1)
A2A4P0 (1)
A2A547 (1)
A2A5N2 (1)
A2A5Y4 (1)
A2A654 (1)
A2A6A1 (1)
A2A6T1 (1)
A2A7A1 (1)
A2A7A2 (1)
A2A7B5 (1)
A2A7I1 (1)
A2A7S7 (1)
A2A7S8-2 (1)
A2A838 (1)

ENSEMBL ID

ENSMUSG00000021039 (1)
ENSMUSG00000032652 (1)
ENSMUSG00000090272 (1)
ENSMUSP00000141097 (1)
ENSMUSP00000141637 (1)

CHEBI ID

CHEBI:16750 (3)
CHEBI:17596 (3)
CHEBI:17460 (2)
CHEBI:17256 (2)
CHEBI:17521 (2)
CHEBI:16356 (2)
CHEBI:28635 (2)
CHEBI:30816 (2)
CHEBI:17755 (2)
CHEBI:16742 (2)
CHEBI:17748 (2)
CHEBI:30838 (2)
CHEBI:16119 (2)
CHEBI:18107 (2)
CHEBI:17405 (2)
CHEBI:17515 (2)
CHEBI:15891 (2)
CHEBI:17821 (2)
CHEBI:17509 (2)
CHEBI:16040 (2)
CHEBI:17568 (2)
CHEBI:17015 (2)
CHEBI:32816 (2)
CHEBI:15428 (2)
CHEBI:16450 (2)
CHEBI:17562 (2)
CHEBI:16335 (2)
CHEBI:17368 (2)
CHEBI:17687 (2)
CHEBI:64645 (1)

Metabolite Name

Glycine (3)
Taurine (3)
Xanthosine (3)
Adenosine (3)
Cytosine (3)
Cytidine (3)
Guanosine (3)
2-Oxo-8-methylthiooctanoic acid (2)
Flavin adenine dinucleotide (2)
Accurate mass (2)
4-Methylthiobutanaldoxime (2)
Cystathionine (2)
Isopentenyl pyrophosphate (2)
Phenol (2)
3-Methoxytyramine (2)
Lipoamide (2)
Indoleacetic acid (2)
Uracil (2)
Phenethylamine (2)
Thymine (2)
Lidocaine (2)
Deoxyuridine (2)
Citrulline (2)
Benzaldehyde (2)
2-Aminophenol (2)
Nicotinic acid (2)
Purine (2)
Deoxyadenosine (2)
Pyridoxamine (2)
L-Histidine (2)

First Public Date

2024 (1)

Modelling Approach

Computational model (3)
Ordinary differential equation model (2)
Constraint-based model (1)

Lab affiliation

University of Greifswald, Institute of Microbiology, Department of Microbial Proteomics, Felix-Hausdorff-Str. 8, 17489 Greifswald, Germany (7)
Dr. Elke Hammer Universitätsmedizin Greifswald Interfakultäres Institut für Genetik und Funktionelle Genomforschung Abteilung für Funktionelle Genomforschung Felix-Hausdorff-Straße 8 17487 Greifswald Germany (4)
Hannover Medical School, Department of Cardiology and Angiology, Division of Molecular and Translational Cardiology, Hans Borst Center for Heart and Stem Cell Research, Hannover (4)
Proteomics Platform CIC bioGUNE Bizkaia Tech. Park Build. 800 48160 Derio (Spain) (4)
Proteomics Platform CIC bioGUNE Bizkaia Tech. Park Build. 800 Derio 48160 Spain (4)
Proteomics Service CIC bioGUNE Bizkaia Tech. Park Build. 800 Derio 48160 Spain (4)
Universitätsmedizin Greifswald Interfakultäres Institut für Genetik und Funktionelle Genomforschung Abteilung für Funktionelle Genomforschung Felix-Hausdorff-Straße 8 17487 Greifswald (4)
Department of Cell Biology, Harvard Medical School, Boston MA, USA (3)
Dr. Elke Hammer Universitätsmedizin Greifswald Interfakultäres Institut für Genetik und Funktionelle Genomforschung Abteilung für Funktionelle Genomforschung Felix-Hausdorff-Straße 8 17487 Greifswald (3)
Experimental Systems Immunology, Max Planck Institute of Biochemistry, Martinsried, Germany (3)
Hannover Medical School, Department of Cardiology and Angiology (3)
Institut für Mikrobiologie, Universität Greifswald, Felix-Hausdorff-Str. 8, 17489 Greifswald (3)
Institute for Microbiology, University of Greifswald, Felix-Hausdorff-Straße 8, 17489 Greifswald, Germany (3)
Institute of Microbiology, University of Greifswald, Felix-Hausdorff-Strasse 8, 17489 Greifswald, Germany (3)
Proteomics Service CIC bioGUNE Bizkaia Tech. Park Build. 800 48160 Derio (Spain) (3)
University Medicine Greifswald Department for Functional Genomics Felix-Hausdorff-Straße 8 17487 Greifswald (3)
Universitätsmedizin Greifswald Interfakultäres Institut für Genetik und Funktionelle Genomforschung Abteilung für Funktionelle Genomforschung Felix-Hausdorff-Straße 8 17487 Greifswald Germany (3)
Department of Cell Biology, Harvard Medical School, 240 Longwood Ave., Boston, MA 02115 (2)
Department of Microbial Proteomics, Institute of Microbiology, Center for Functional Genomics of Microbes, University of Greifswald, Felix-Hausdorff-Str. 8, 17489 Greifswald, Germany (2)
Institut für Mikrobiologie Dept. Mikrobielle Proteomik Universität Greifswald Felix-Hausdorff-Str. 8 17489 Greifswald (2)
Institut für Mikrobiologie Universität Greifswald Felix Hausdorff Str.8 17489 Greifswald Tel.: (+49) 03834 420 5903 Fax.: (+49) 03834 420 5002 (2)
Institute of Innate Immunity, Department of Systems Immunology and Proteomics, Medical Faculty, University of Bonn, Bonn, Germany (2)
Protemics Service CIC bioGUNE Bizkaia Tech. Park Build. 800 48160 Derio (Spain) (2)
University of Greifswald, Center for Functional Genomics of Microbes, Institute of Microbiology, Department of Microbial Proteomics, Felix Hausdorff Str. 8, 17489 Greifswald, Germany (2)
lab (2)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (1)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (1)
BioMedizinisches Centrum - LMU Molecular Biology Großhaderner Str. 9 82152 Planegg-Martinsried GERMANY (1)
CEBI, Department of Biochemistry and Molecular Biology, Faculty of Science, University of Southern Denmark, Odense, Denmark (1)
CIC bioGUNE Proteomics Platform Bizkaia Tech. Park Build 800 Derio 48160 Spain (1)

IsPrivate

False (6)

Submitter Keywords

FAIR-AIML (3)
Machine Learning Model (3)
Ersilia (2)

Modification

15.994915 (1)
3x(2)H labeled N6-acetyl-L-lysine (1)
4x(15)N labeled L-arginine (1)
57.021464 (1)
Not available (1)

Study type

Transcription profiling by array (51)
RNA-seq of coding RNA (31)
ChIP-seq (15)
Methylation profiling by array (9)
Methylation profiling by high throughput sequencing (9)
RNA-seq of non coding RNA (8)
RNA-seq of coding RNA from single cells (6)
DNA-seq (5)
Transcription profiling by tiling array (3)
Bisulfite-seq (2)
Other (2)
Unknown experiment type (1)
ChIP-chip by tiling array (1)
Human - High-throughput sequencing (1)
Plant - High-throughput sequencing (1)
Transcription profiling by RT-PCR (1)
MicroRNA profiling by high throughput sequencing (1)
Comparative genomic hybridization by array (1)
Hi-C (1)

Release Date

2022 (174)
2025 (173)
2023 (166)
2021 (160)
2024 (145)
2020 (127)
2019 (107)
2018 (87)
2016 (67)
2015 (63)
2017 (60)
2014 (45)
2012 (39)
2013 (32)
2011 (31)
2010 (30)
2026 (28)
2009 (13)
2008 (4)
2007 (3)
2006 (2)
2005 (1)
2004 (1)
2002 (1)
2001 (1)

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Temperature-dependent alternative splicing of FLM controls flowering in Arabidopsis thaliana

How plants control the transition to flowering in response to ambient temperature is only beginning to be understood. In Arabidopsis thaliana, the MADS-box transcription factor genes FLOWERING LOCUS M (FLM) and SHORT VEGETATIVE PHASE (SVP) have key roles in this process. FLM is subject to temperatu...

ORGANISM(S): Arabidopsis thaliana

2013-09-19 | E-GEOD-48082 | biostudies-arrayexpress

Comparison of B. japonicum mutant strain M-NM-^T901 induced versus wild type uninduced

An initializing step in the rhizobia-legume symbiosis is the secretion of flavonoids by plants that leads to the expression of nodulation genes in rhizobia. Here we report the genome-wide transcriptional response of Bradyrhizobium japonicum to genistein, an isoflavone secreted by soybean. About 100 ...

ORGANISM(S): Bradyrhizobium japonicum

2007-10-14 | E-GEOD-8570 | biostudies-arrayexpress

Protective antibody response following oral vaccination with microencapsulated Bacillus Anthracis Sterne strain 34F2 spores.

Not available

S-EPMC7351773 | biostudies-literature

Flow-cytometric analysis of membrane integrity of stallion sperm in the face of agglutination: the "zombie sperm" dilemma.

Not available

S-EPMC8490572 | biostudies-literature

IR spectroscopic characterization of [M,C,2H]⁺ (M = Ru and Rh) products formed by reacting 4d transition metal cations with oxirane: Spectroscopic evidence for multireference character in RhCH₂.

Not available

S-EPMC11022548 | biostudies-literature

Crystal structure and metal binding properties of the periplasmic iron component EfeM from Pseudomonas syringae EfeUOB/M iron-transport system.