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ProteomicsGlobal phosphoproteomic profiling reveals distinct signatures in B-cell non-Hodgkin lymphomas
Ammonium hydroxide and pyrrolidine eluents were dried (SpeedVac) and reconstituted in 25 ul sample loading buffer (0.1% TFA/2% acetonitrile). Eluent from phosphotyrosine immunoprecipitation was dried and reconstituted in 35 ul of the loading buffer. An LTQ Orbitrap XL (ThermoFisher) in-line with a P...
ORGANISM(S): Homo sapiens (Human) 
2014-01-09 | PXD000658 | Pride
Ms/ms B-cell lymphoma Phosphoproteome 
ProteomicsReconstructing targetable pathways in lung cancer by integrating diverse omics data
We profile transcriptome, proteome and phosphoproteome in a panel of non-small cell lung cancer (NSCLC) cell lines in order to reconstruct targetable networks associated with KRAS dependency. We develop a two-step bioinformatics strategy addressing the challenge of integrating these disparate datase...
ORGANISM(S): Homo sapiens (Human) 
2014-06-24 | PXD000439 | Pride
Lung cancer Kras Cancer Cancer by kras dependency Human Proteome Phosphoproteome 
ProteomicsFunctional Proteogenomics Reveals Biomarkers and Therapeutic Targets in Lymphomas
The proteomic and posttranslational modification signatures of most cancers are unknown. N-linked glycosylation is a post-translational modification that targets proteins for membrane expression or secretion making this class of proteins attractive cancer biomarkers and therapeutic targets. Using an...
ORGANISM(S): Homo sapiens (Human) 
2017-06-19 | PXD003469 | Pride
Glycoproteomics Ms/ms B-cell lymphoma 
ProteomicsHs_BCell_Phospho_FT
Global phosphoproteomic profiling reveals distinct signatures in B-cell non-Hodgkin lymphomas,LTQFT
ORGANISM(S): Homo Sapiens (human) 
2014-12-31 | PAe005236 | PeptideAtlas
ProteomicsEBprot: Bayesian Analysis of Labelling-based Quantitative Proteomics Data
Labelling-based proteomics is a powerful method for detection of differentially expressed proteins (DEPs) between biological samples. The current data analysis platform relies on protein-level ratios, where peptide-level ratios are averaged to yield a single summary ratio for each protein. In shotgu...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2017-03-29 | MSV000080742 | MassIVE
ProteomicsH.sapiens - Cell line, H727, SC (Balbin,nat_commun,2013)
abundance based on Spectral counting, H727, Interaction consistency score: 0.3, Coverage: 37
ORGANISM(S): 9606 
2013-00-00 | 3457114045 | PAXDB
ProteomicsH.sapiens - Cell line, Sklu1, SC (Balbin,nat_commun,2013)
abundance based on Spectral counting, SKLU1, Interaction consistency score: 0.7, Coverage: 36
ORGANISM(S): 9606 
2013-00-00 | 2680154810 | PAXDB
ProteomicsH.sapiens - Cell line, H2122, SC (Balbin,nat_commun,2013)
abundance based on Spectral counting, H2122, Interaction consistency score: 1.2, Coverage: 37
ORGANISM(S): 9606 
2013-00-00 | 2423396049 | PAXDB
ProteomicsH.sapiens - Cell line, H2009, SC (Balbin,nat_commun,2013)
abundance based on Spectral counting, H2009, Interaction consistency score: 3.1, Coverage: 27
ORGANISM(S): 9606 
2013-00-00 | 4250203696 | PAXDB
ProteomicsH.sapiens - Cell line, H1734, SC (Balbin,nat_commun,2013)
abundance based on Spectral counting, H1734, Interaction consistency score: 1.4, Coverage: 29
ORGANISM(S): 9606 
2013-00-00 | 84271349 | PAXDB
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