Fernando S S - OmicsDI

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Unknown (1149)
Proteomics (132)
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Other (1)

Organisms

Homo sapiens (121)
Mycobacterium tuberculosis SP7 (69)
Mycobacterium tuberculosis SP10 (69)
Mycobacterium tuberculosis SP13 (69)
Mycobacterium tuberculosis SP22 (69)
Chlamydomonas reinhardtii (69)
Enterococcus mundtii CRL35 (69)
Oncorhynchus tshawytscha (69)
Pseudomonas canadensis (69)
Human alphaherpesvirus 1 strain 17 (69)
Mycobacterium tuberculosis SP1 (69)
Mus musculus (41)
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Drosophila melanogaster (3)
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Escherichia coli str. K-12 substr. MG1655 (1)

Repository

biostudies-arrayexpress (136)
pride (69)
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Progressive familial intrahepatic cholestasis 3 (1)
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Cutaneous malignant melanoma 1 (1)
Pancreas adenocarcinoma (1)
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Autism spectrum disorder (1)
Leishmaniasis (1)
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Glioblastoma (1)
Stomach carcinoma (1)
Amyotrophic lateral sclerosis (1)

Technology Type

Mass Spectrometry (69)
Shotgun proteomics (36)
Mass spectrometry (14)
Top-down proteomics (12)
Affinity purification coupled with mass spectrometry proteomics (9)
Bottom-up proteomics (8)
Data-dependent acquisition (7)
Chemical cross-linking coupled with mass spectrometry proteomics (4)
Gel-based experiment (3)
MSE (2)
Illumina HiSeq 2500, Illumina HiSeq 2000 (1)
NMR spectroscopy (1)
All-ion fragmentation (1)
DiaPASEF (1)
HDMSE (1)
SWATH MS (1)
SRM/MRM (1)

Instrument Platform

LTQ Orbitrap Velos (23)
GC-MS (12)
GC MS (6)
TripleTOF 5600 (6)
Illumina HiSeq 2500 (5)
Illumina NovaSeq 6000 (5)
Illumina HiSeq 2000 (4)
Illumina HiSeq 4000 (4)
IScan (3)
MS:1000419 (3)
LTQ Orbitrap (3)
Orbitrap Fusion (2)
Q Exactive (2)
MS:1000044 (2)
MS:1000031 (2)
STAR (1)
Single Cell/Low Input RNA Library Prep Kit for Illumina (#E6420S, New England Biolabs) (1)
RNA Micro Kit (Qiagen). (1)
GeneChip Scanner 2500 (1)
MACS (1)
0.7 W LED light (1)
10X Genomics Chromium (1)
MoFlo XDP (Beckman Coulter) or a FACSAria II (Becton Dickinson) (1)
Fluidigm C1 autoprep system (1)
Illumina HiScanSQ (1)
ScanArray 4000 [PerkinElmer] (1)
AB SOLiD 4 System (1)
ScanArray Lite [PerkinElmer] (1)
Instrument (1)
Agilent 7890A GC with 5975C inert XL MSD (1)

Publication Date

2014 (32)
2016 (31)
2015 (29)
2021 (24)
2025 (16)
2023 (15)
2019 (15)
2013 (15)
2024 (14)
2022 (13)
2010 (13)
2012 (12)
2018 (10)
2020 (9)
2017 (8)
2011 (8)
2026 (6)
2009 (6)
2008 (4)
2007 (4)
2006 (1)

UNIPROT ID/AC

Q9NPD3 (21)
Q9Y2Z0-2 (21)
Q9Y2Z0 (21)
Q9Y224 (21)
Q9UHV9 (21)
Q9NSD9 (21)
Q99615 (21)
Q86U42 (21)
Q9UMS4 (21)
Q86V81 (21)
Q5VWC4 (21)
Q15056-2 (21)
Q15056 (21)
Q9Y6G9 (21)
Q9Y4L1 (21)
Q9Y3I0 (21)
Q9Y3F4 (21)
Q9Y2T7 (21)
Q9ULV4 (21)
Q9UJU6-3 (21)
Q9UJU6 (21)
Q9UHD8-5 (21)
Q9UHD8-2 (21)
Q9UHD8 (21)
Q9P2J5 (21)
Q9BT78 (21)
Q96C19 (21)
Q96AE4-2 (21)
Q96AE4 (21)
Q92900-2 (21)

ENSEMBL ID

ENSG00000170477 (21)
ENSG00000247315 (6)
ENSG00000147251 (5)

CHEBI ID

CHEBI:17620 (5)
CHEBI:18012 (5)
CHEBI:17521 (4)
CHEBI:16977 (4)
CHEBI:340824 (4)
CHEBI:27956 (4)
CHEBI:5457 (4)
CHEBI:16958 (4)
CHEBI:15963 (4)
CHEBI:17268 (4)
CHEBI:17115 (4)
CHEBI:30763 (4)
CHEBI:17203 (4)
CHEBI:16857 (4)
CHEBI:16015 (4)
CHEBI:16919 (4)
CHEBI:65751 (3)
CHEBI:28527 (3)
CHEBI:39244 (3)
CHEBI:28635 (3)
CHEBI:320061 (3)
CHEBI:22653 (3)
CHEBI:15676 (3)
CHEBI:18266 (3)
CHEBI:15586 (3)
CHEBI:16934 (3)
CHEBI:17505 (3)
CHEBI:16534 (3)
CHEBI:15824 (3)
CHEBI:17113 (3)

Metabolite Name

Glycerophosphoglycerol (4)
Beta-alanine (4)
Ferulic acid (4)
Myo-inositol (4)
Alpha,beta-trehalose (3)
2-isopropylmalic acid (3)
Methyl alpha-D-glucopyranoside (3)
Ononitol (3)
L-alanine (3)
D-(−)-2-methylmalic acid (3)
Phosphoric acid monomethyl ester (3)
3-cyano-L-alanine (3)
Trans-4-coumaric acid (3)
Galactinol (3)
L-dehydroascorbic acid (3)
D-galactonic acid (3)
Putrescine (3)
1,6-anhydro-beta-D-glucose (3)
Spermidine (3)
D-glucopyranose (3)
D-ribitol (3)
D-saccharic acid (3)
4-hydroxybenzoic acid (3)
L-threonine (3)
L-glyceric acid (3)
Hexatriacontane (3)
Fumaric acid (3)
L-glutamic acid (3)
L-proline (3)
L-serine (3)

IsPrivate

False (1)

Modelling Approach

Ordinary differential equation model (1)

Study type

Transcription profiling by array (78)
RNA-seq of coding RNA (20)
ChIP-seq (10)
RNA-seq of coding RNA from single cells (8)
Transcription profiling by RT-PCR (4)
ChIP-chip by array (3)
Comparative genomic hybridization by array (3)
Methylation profiling by array (2)
Cell line - Methylation microarray (1)
Unknown experiment type (1)
Differential (1)
Human - Methylation microarray (1)
ChIP-chip by tiling array (1)
Human - Single-cell sequencing (1)
Human - One-color microarray (1)
Other (1)

Release Date

2025 (152)
2022 (144)
2023 (142)
2021 (131)
2024 (129)
2020 (104)
2019 (87)
2018 (73)
2016 (56)
2015 (52)
2017 (48)
2014 (34)
2013 (26)
2026 (22)
2012 (19)
2011 (18)
2010 (18)
2009 (11)
2008 (7)
2007 (5)
2005 (3)
2006 (1)
2004 (1)
2002 (1)
2000 (1)

Lab affiliation

University of Vienna (4)
Institute of Cancer Research, London (4)
Fernando Garcia Martinez Ph.D. Proteomics & MS Specialist Proteomics Unit, Spanish National Cancer Research Centre (CNIO) Melchor Fernández Almagro 3. E28029 MADRID, SPAIN. Phone +34 912246900 ext 3112 (4)
Agriculture and Agrifood Canada Morden Research and Development Centre (2)
Departamento de Medicina Animal, Hospital Clínico Veterinario Universidad de Extremadura Avd de la Universidad s/n 10003 Cáceres SPAIN (2)
Javier Muñoz, PhD - Head of Proteomics Unit Spanish National Cancer Research Centre (CNIO) Address: Melchor Fernández Almagro, 3. 28029 Madrid. SPAIN Phone: +34 917 328 000 Ext. 3110 (2)
Senior Postdoctoral Fellow, Huntington Laboratory, The Walter and Eliza Hall Institute, Australia (2)
Laboratory 17 of Cellular Biology in CINVESTAV, CDMX (2)
CNB-CSIC (2)
University of Victoria (2)
School of Animal Sciences, Virginia Tech. (1)
Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Australia (1)
Full professor, Federal University of São Paulo, Brazil. (1)
Synapse Proteomics Group, Children's Medical Research Institute, University of Sydney, Westmead, New South Wales, Australia (1)
Mechanisms of Diseases & Translational Research, School ofMedical Sciences, Department of Pathology, UNSW, Sydney, Australia (1)
Proteomics Unit. Macromolecular Structures Department. Spanish National Biotechnology Centre. (1)
Universidad Autónoma de Madrid, Facultad de Medicina. (1)
Head of Proteomics Unit Spanish National Cancer Research Centre (CNIO) Address: Melchor Fernández Almagro, 3. 28029 Madrid. SPAIN Phone: +34 917 328 000 Ext. 3110 (1)
Division of Immunology, Department of Pathology, University of Cambridge (1)
Department of Chemistry and Biochemistry University of Bern Freiestrasse 3 3012 Bern Switzerland (1)
Proteomics Unit - Biotechnology Programme Centro Nacional de Investigaciones Oncologicas (CNIO) Melchor Fernandez Almagro, 3 28029 Madrid (SPAIN) Phone +34 91 328 000 (1)
Professor of Biochemistry Proteomics Unit Centro Nacional de Biotecnología (CSIC) Darwin 3, 28049, Madrid (1)
Department of Periodontology, Dental Research Division, Guarulhos University (UnG), Guarulhos, Sāo Paulo 07023-070, Brazil | Dental Science School (Faculdade de Ciências Odontológicas - FCO), Montes Claros, Minas Gerais 39401-303 Brazil. (1)
Functional Proteomics Lab, National Center for Biotechnology (CNB-CSIC) (1)
Head of Proteomics Unit Spanish National Cancer Research Centre (CNIO) Address: Melchor Fernández Almagro, 3. 28029 Madrid. SPAIN (1)
Institute of Cell Biology University of Bern (1)
Proteomics & MS Specialist Proteomics Unit, Spanish National Cancer Research Centre (CNIO) Melchor Fernández Almagro 3. E28029 MADRID, SPAIN. Phone +34 912246900 ext 3112 (1)
Animal Medicine Department, University of Extremadura, 10003 Cáceres, Spain (1)
Department of Chemistry, Biochemistry and Pharmaceutical Sciences, University of Bern (1)
Biochemistry & Proteomics Group, Department of Chemistry and Biomolecular Science, Clarkson University, Potsdam, NY, USA (1)

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RNA-seq of Brassica napus in response to PA23 in the presence or absence of Sclerotinia sclerotiorum

Background: The biological control agent Pseudomonas chlororaphis PA23 is effective at protecting Brassica napus (canola) from the necrotrophic fungus Sclerotinia sclerotiorum via direct antagonism. Despite the growing importance of biocontrol bacteria in plant protection from fungal pathogens, litt...

ORGANISM(S): Brassica napus

2016-07-25 | E-GEOD-84798 | biostudies-arrayexpress

Low mtDNA diversity in a highly differentiated population of spinner dolphins (Stenella longirostris) from the Fernando de Noronha Archipelago, Brazil.

Not available

S-EPMC7138316 | biostudies-literature

Workers' Healthcare Assistance Model (WHAM): Development, Validation, and Assessment of Sustainable Return on Investment (S-ROI).

Not available

S-EPMC7246570 | biostudies-literature

Comparative toxicokinetics of bisphenol S in rats and mice following gavage administration.

Not available

S-EPMC7891184 | biostudies-literature

Targeted paired-end sequencing of nascent RNA from S. cerevisiae

Targeted paired-end sequencing of cDNA from unfragmented nascent RNA from exponentially growing S. cerevisiae cells was employed to obtain Pol II transcription elongation and splicing information from single transcripts. Nascent RNA was prepared from the yeast chromatin fraction (Carrillo Oesterreic...

ORGANISM(S): Saccharomyces cerevisiae

2016-03-24 | E-GEOD-70907 | biostudies-arrayexpress

WHO water quality standards Vs Synergic effect(s) of fluoride, heavy metals and hardness in drinking water on kidney tissues.

Not available

S-EPMC5307334 | biostudies-literature

Benthic reef assemblages of the Fernando de Noronha Archipelago, tropical South-west Atlantic: Effects of depth, wave exposure and cross-shelf positioning.

Not available

S-EPMC6328163 | biostudies-literature

Untargeted LC-MS metabolomic studies of Asteraceae species to discover inhibitors of Leishmania major dihydroorotate dehydrogenase

INTRODUCTION: Interesting data about the family Asteraceae as a new source of Leishmania major dihydroorotate dehydrogenase (LmDHODH) inhibitors are presented. This key macromolecular target for parasites causing neglected diseases catalyzes the fourth reaction of the de novo pyr...

2019-10-14 | MTBLS722 | MetaboLights

Characterization of Bacillus Strains from Natural Honeybee Products with High Keratinolytic Activity and Antimicrobial Potential.

Not available

S-EPMC9959047 | biostudies-literature

TIMP1 mediates astrocyte-dependent local immunosuppression in brain metastasis acting on infiltrating CD8+ T cells.

Immunotherapies against brain metastases have shown clinical benefits mainly when applied to locally asymptomatic patients. It is currently unclear why responses to this therapy drop in symptomatic brain metastases, since the use of corticoids is not consistently involved. We report here that a subp...

ORGANISM(S): Mus musculus (Mouse)

2024-08-27 | PXD040436 | Pride

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1468 Results

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