Ferrari J J - OmicsDI

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Unknown (1555)
Transcriptomics (25)
Proteomics (20)
Metabolomics (3)

Organisms

Homo sapiens (25)
Mus musculus (14)
Saccharomyces cerevisiae (2)
Macaca mulatta (1)
Arabidopsis thaliana (1)
Schizophyllum commune (1)
mixed DNA libraries (1)

Repository

biostudies-arrayexpress (25)
pride (19)
MetaboLights (3)
MassIVE (1)

Tissue

B cell (2)
Blood (2)
Cell culture (2)
Oral epithelium (2)
Blood plasma (1)
Immortal cell line cell (1)
Leukocyte (1)
Mesothelium (1)
Mucosal melanoma cell (1)
Neural progenitor cell (1)
Neural retina (1)
Ovarian serous carcinoma cell (1)
Ovarian surface epithelial cell (1)
Permanent cell line cell (1)
Pleural mesothelium (1)
Renal cell carcinoma cell (1)
Testis (1)
Urinary bladder cancer cell (1)

Disease

Acute leukemia (1)
Benign mesothelioma (1)
Disease free (1)
Malignant mesothelioma (1)
Malignant neoplasm of ovary (1)
Multiple sclerosis (1)
Renal cell carcinoma (1)
Urinary bladder cancer (1)

Technology Type

Mass Spectrometry (19)
Shotgun proteomics (14)
Mass spectrometry (3)
Data-dependent acquisition (2)
Affinity purification coupled with mass spectrometry proteomics (1)
Bottom-up proteomics (1)
Immunopeptidomics (1)
SWATH MS (1)
Top-down proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (2)
FACS (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2000 (1)
Orbitrap Eclipse (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - negative - reverse phase (1)
Q Exactive (1)

Publication Date

2020 (7)
2008 (5)
2024 (4)
2026 (4)
2019 (4)
2018 (3)
2023 (3)
2016 (2)
2010 (2)
2009 (2)
2005 (2)
2017 (1)
2015 (1)
2013 (1)
2012 (1)
2011 (1)
2007 (1)
2025 (1)
2022 (1)
2021 (1)

CHEBI ID

CHEBI:16737 (3)
CHEBI:131454 (2)
CHEBI:133077 (2)
CHEBI:133096 (2)
CHEBI:133144 (2)
CHEBI:140430 (2)
CHEBI:15035 (2)
CHEBI:15354 (2)
CHEBI:15428 (2)
CHEBI:15676 (2)
CHEBI:15741 (2)
CHEBI:15746 (2)
CHEBI:15756 (2)
CHEBI:15891 (2)
CHEBI:16027 (2)
CHEBI:16040 (2)
CHEBI:16113 (2)
CHEBI:16199 (2)
CHEBI:16235 (2)
CHEBI:16359 (2)
CHEBI:16393 (2)
CHEBI:16411 (2)
CHEBI:16566 (2)
CHEBI:16610 (2)
CHEBI:16675 (2)
CHEBI:16704 (2)
CHEBI:16750 (2)
CHEBI:16755 (2)
CHEBI:16914 (2)
CHEBI:16919 (2)

Metabolite Name

15-HETE (2)
(-)-12-hydroxy-9,10-dihydrojasmonic acid (1)
(-)-2,7-Dolabelladiene-6beta,10alpha,18-triol (1)
(-)-8-hydroxy-11E,17-octadecadien-9-ynoic acid (1)
(-)-Cladielline (1)
(-)-Dilophol (1)
(-)-erythro-Anethole glycol 1-glucoside (1)
(-)-erythro-Anethole glycol 2-glucoside (1)
(1R,2R)-3-oxo-2-pentyl-cyclopentanehexanoic acid (1)
(1R,2R,4S)-p-Menthane-1,2,8-triol 8-glucoside (1)
(1S,2S)-3-oxo-2-pentyl-cyclopentanehexanoic acid (1)
(22E)-3beta-Hydroxy-5alpha-chola-7,22-dien-24-oic Acid (1)
(2E,4Z)-Decadienoylcarnitine (1)
(2R*,3R*)-1,2,3-Butanetriol (1)
(2R,3R,4R)-2-Amino-4-hydroxy-3-methylpentanoic acid (1)
(2S,4S)-Monatin (1)
(3S,5R,6R,7E)-3,5,6-Trihydroxy-7-megastigmen-9-one (1)
(3b,6b,8b,12a)-8,12-Epoxy-7(11)-eremophilene-6-angeloyloxy-8,12-dimethoxy-3-ol (1)
(4E,15E)-Bilirubin (1)
(4E,8E,10E-d18:3)sphingosine (1)
(5alpha,8beta,9beta)-5,9-Epoxy-3,6-megastigmadien-8-ol (1)
(6E,8E,10R,12Z)-10-Hydroxy-3-oxooctadecatrienoic acid (1)
(6E,9E,12E,15E,18E,21E)-tetracosa-6,9,12,15,18,21-hexaenoic acid (1)
(6beta,8alpha)-6-Hydroxy-7(11)-eremophilen-12,8-olide (1)
(7Z)-14-hydroxy-10,13-dioxoheptadec-7-enoic acid (1)
(9R,10S,12Z)-9,10-Dihydroxy-8-oxo-12-octadecenoic acid (1)
(9R,13R)-1a,1b-dinor-10,11-dihydro-12-oxo-15-phytoenoic acid (1)
(9S,13S)-1a,1b-dihomo-jasmonic acid (1)
(9Z,11R,12S,13S,15Z)-12,13-Epoxy-11-hydroxy-9,15-octadecadienoic acid (1)
(E)-2-Methyl-2-buten-1-ol O-beta-D-Glucopyranoside (1)

Study type

Transcription profiling by array (18)
Cell line - One-color microarray (2)
RNA-seq of coding RNA (2)
Unknown experiment type (1)
ChIP-chip by array (1)
ATAC-seq (1)

Release Date

2022 (178)
2021 (174)
2023 (164)
2025 (157)
2024 (146)
2020 (132)
2019 (98)
2018 (93)
2017 (79)
2015 (75)
2016 (67)
2014 (51)
2012 (33)
2013 (29)
2011 (24)
2026 (23)
2009 (13)
2010 (12)
2008 (10)
2007 (6)
2005 (6)
2004 (3)
2003 (2)
2001 (2)
2000 (2)
2006 (1)

Lab affiliation

Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, USA (1)
Department of Life Sciences, University of Mdoena and Reggio Emilia (1)
Department of Medical BioSciences, Radboud University Medical Center, Nijmegen 6525 GA, The Netherlands. (1)
Department of Molecular Mechanisms of Disease, University of Zurich, CH-8057 Zurich, Switzerland (1)
Department of Pharmacology, Northwestern University Feinberg School of Medicine, Chicago, IL, USA Center for Synthetic Biology, Northwestern University, Evanston, IL, USA (1)
Dept. Oncology-Pathology, SciLifeLab, Karolinska Institutet, Stockholm, Sweden (1)
Dept. Oncology-Pathology, Scilifelab, Karolinska Institutet, Sweden (1)
Head of The Steen-Laboratory, Director of Proteomics, Boston Children's Hospital, Harvard Medical School (1)
Institute for Research in Biomedicine, Università della Svizzera italiana, Bellinzona, Switzerland. (1)
Institute of Bioinformatics 7th floor, Discoverer building, International Tech Park, Bangalore 560 066 (1)
Institute of Bioinformatics, 7th floor, Discoverer building, International Tech Park, Bangalore 560 066 (1)
Institute of Bioinformatics, Bangalore (1)
Karolinska Institutet, Department of Oncology-Pathology (OnkPat) (1)
Laboratoire de Spectrometrie de Masse Proteomique Institut Curie PSL Research University (1)
Mass Spectrometry Facility, Max Perutz Labs, University of Vienna, Vienna BioCenter, Dr. Bohr-Gasse 9, 1030 Vienna, Austria (1)
National Research Council of Italy – Water Research Institute (CNR-IRSA) Molecular Ecology Group (MEG), Verbania, Italy (1)
NeuroEpigenetics Lab - Department of Cellular, Computational and Integrative Biology - CIBIO University of Trento, Via Sommarive 9, I - 38123 Povo (Trento) (1)
Università del Piemonte Orientale, Dipartimento di medicina traslazionale. (1)
Urological Research Institute DiBit2, Scientific Institute San Raffaele Via Olgettina 60, 20132 Milan - Italy Tel: +39-02-2643.6351; Fax. +39-02-2643.5659 (1)

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Myocyte enhancer factor 2 activates promoter sequences of the human AbetaH-J-J locus, encoding aspartyl-beta-hydroxylase, junctin, and junctate.

Not available

S-EPMC1069596 | biostudies-literature

Improving quality of breast conservative surgery for lower quadrants cancer in small and medium sized breasts: Crescent technique versus J mammoplasty.

Not available

S-EPMC11399005 | biostudies-literature

Discovery proteomics studies for the identification of a protein panel associated with the response to pemetrexed in platinum drug resistant cancer

Pemetrexed is a drug largely used in lung cancer, mesothelioma and proposed in some cases of ovarian cancers, a particularly severe cancer type. In this latest tumor type, therapy relies on debulking surgery and platinum-based chemotherapy. Despite the initial high response rates to platinum drugs, ...

ORGANISM(S): Homo sapiens (Human)

2018-06-06 | PXD007056 | Pride

Glucose Oxidase, an Enzyme "Ferrari": Its Structure, Function, Production and Properties in the Light of Various Industrial and Biotechnological Applications.

Not available

S-EPMC8946809 | biostudies-literature

Protocol for the DeFOG trial: A randomized controlled trial on the effects of smartphone-based, on-demand cueing for freezing of gait in Parkinson's disease.

Not available

S-EPMC8591418 | biostudies-literature

Proteomic profiles of Schizophyllum commune mycelium, using two different protein extraction methods

Schizophyllum commune is a wood decay fungus known for its antioxidant, anti-tumor, immunological, and antimicrobial properties. Nonetheless, the effects of growth conditions on the activation of metabolic pathways are still poorly understood for this fungus. To this aim, proteomics is one of the mo...

ORGANISM(S): Schizophyllum commune

2025-05-06 | PXD048036 | Pride

Protein extraction method wood decay fungi mycelium basidiomycetes schizophyllum commune

Neuronal α-Synuclein Disease Stage Progression over 5 Years.

Not available

S-EPMC12273616 | biostudies-literature

Array CGH data of 64 prostate cancer specimens

The dataset comprises array CGH data of 64 prostate cancer specimens performed on Stanford cDNA microarrays, to accompany the study of J Lapointe et al (2007). For each array, Channel 2 represents Cy5-labeled prostate genomic DNA, and Channel 1 Cy3-labeled normal male genomic DNA. Set of arrays org...

ORGANISM(S): Homo sapiens

2007-10-02 | E-GEOD-6469 | biostudies-arrayexpress

HT-SuMD: making molecular dynamics simulations suitable for fragment-based screening. A comparative study with NMR.

Not available

S-EPMC7598995 | biostudies-literature

Identification of Exciton Complexes in Charge-Tunable Janus W_Se^S Monolayers.

Not available

S-EPMC10134503 | biostudies-literature

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