Ferreira R R - OmicsDI

Show results for

Unknown (3806)
Proteomics (86)
Transcriptomics (72)
Genomics (33)
Metabolomics (9)
Models (2)

Organisms

Homo sapiens (108)
Mus musculus (24)
Haloferax volcanii (6)
Saccharomyces cerevisiae (5)
Bos taurus (5)
Haloferax volcanii DS2 (4)
Rattus norvegicus (3)
Burkholderia multivorans (2)
Sus scrofa (2)
Canis lupus familiaris (2)
Arabidopsis thaliana (2)
Escherichia coli (2)
Portulaca oleracea (2)
Enchytraeus albidus (1)
Vibrio parahaemolyticus (1)
Listeria monocytogenes EGD-e (1)
Trypanosoma brucei brucei (1)
Nicotiana benthamiana (1)
Aspergillus fumigatus (1)
Schistosoma mansoni (1)
Burkholderia cepacia (1)
Streptococcus pneumoniae (1)
Notata (1)
Acyrthosiphon pisum (1)
Aedes aegypti (1)
Archaea (1)
Capsicum chinense (1)
Felis silvestris (1)
Leishmania braziliensis (1)
Sus scrofa domesticus (1)

Repository

pride (76)
biostudies-arrayexpress (75)
EGA (29)
MassIVE (10)
MetaboLights (8)
BioModels (2)
GNPS (1)
ENA (1)

Tissue

Cell culture (7)
Epithelial cell (7)
Heart (4)
Blood plasma (3)
Plant cell (3)
Stomach (3)
Urine (3)
Blood (2)
Bone marrow (2)
Brain (2)
Culture fluid (2)
Extracellular vesicle (2)
Leukocyte (2)
Root (2)
Abdominal aorta aneurysm disease specific cell type (1)
Aortic endothelial cell line (1)
Aortic valve (1)
Bladder (1)
Blood serum (1)
Bone marrow cell (1)
Cardiac muscle (1)
Cell line cell (1)
Cell suspension culture (1)
Colon (1)
Colostrum (1)
Diaphragm (1)
Early embryonic cell (1)
Embryonic stem cell (1)
Fibroblast (1)
T cell (1)

Disease

Cardiovascular system disease (3)
Stomach cancer (3)
Disease free (2)
Lung cancer (2)
Multiple myeloma (2)
Type 2 diabetes mellitus (2)
Urinary bladder cancer (2)
Breast adenocarcinoma (1)
Colon cancer (1)
Acute leukemia (1)
Acute myocardial infarction (1)
Aortic valve stenosis (1)
Breast cancer (1)
Gastric adenocarcinoma (1)
Heart failure (1)
Influenza (1)
Leishmaniasis (1)
Lung adenocarcinoma (1)
Melanoma (1)
Parkinson's disease (1)
Prostate adenocarcinoma (1)
Prostate cancer (1)
Substance-related disorder (1)
Uterine inflammatory disease (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (76)
Shotgun proteomics (49)
Bottom-up proteomics (14)
Illumina 15K (8)
Mass spectrometry (8)
Affinity purification coupled with mass spectrometry proteomics (8)
Gel-based experiment (7)
Data-independent acquisition (5)
SWATH MS (4)
Data-dependent acquisition (3)
Illumina Genome Analyzer IIx, Illumina Genome Analyzer II, Affymetrix U219 (1)
Illumina_670k - Illuminus, Affymetrix 6.0, Illumina 1.2M (1)
Affinity proteomics (1)
All-ion fragmentation (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
HDMSE (1)
Immunopeptidomics (1)
Top-down proteomics (1)

Instrument Platform

Illumina HiSeq 2000 (7)
Q Exactive (6)
Illumina NovaSeq 6000 (5)
NextSeq 500 (3)
Illumina HiSeq 2500 (2)
Liquid Chromatography MS - alternating - hilic (2)
Liquid Chromatography MS - positive - reverse phase (2)
MouseWG-6_V2_0_R3_11278593_A (1)
428 [Affymetrix] (1)
Scanning hardware (1)
7890A GC coupled to a 5975C inert XL MSD, with a 7683 series injector (G2614A) (1)
LTQ Orbitrap Velos (1)
LTQ Orbitrap Elite (1)
LTQ Orbitrap XL ETD (1)
LTQ XL (1)
Orbitrap Fusion (1)
Q Exactive Plus (1)
Xevo G2 Q-Tof (1)
Gas Chromatography MS - (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - negative - reverse phase (1)
MS Imaging - (1)

Publication Date

2022 (21)
2023 (16)
2011 (16)
2024 (14)
2020 (14)
2010 (12)
2021 (10)
2026 (9)
2016 (9)
2025 (9)
2017 (7)
2014 (7)
2012 (7)
2018 (6)
2013 (5)
2008 (3)
2019 (2)
2015 (2)
2006 (1)
2005 (1)

CHEBI ID

CHEBI:25017 (6)
CHEBI:28044 (6)
CHEBI:32816 (6)
CHEBI:15428 (5)
CHEBI:16737 (5)
CHEBI:17234 (5)
CHEBI:17368 (5)
CHEBI:17562 (5)
CHEBI:18186 (5)
CHEBI:22653 (5)
CHEBI:24898 (5)
CHEBI:26271 (5)
CHEBI:27266 (5)
CHEBI:27897 (5)
CHEBI:28300 (5)
CHEBI:29016 (5)
CHEBI:30769 (5)
CHEBI:6650 (5)
CHEBI:15721 (4)
CHEBI:15846 (4)
CHEBI:16235 (4)
CHEBI:16335 (4)
CHEBI:16704 (4)
CHEBI:16708 (4)
CHEBI:16750 (4)
CHEBI:16919 (4)
CHEBI:17015 (4)
CHEBI:17126 (4)
CHEBI:17154 (4)
CHEBI:17202 (4)

Metabolite Name

Carnitine (4)
ADP (3)
AMP (3)
ATP (3)
Betaine (3)
CDP (3)
CTP (3)
Creatinine (3)
Cytidine (3)
GDP (3)
GTP (3)
Glucose (3)
Glycerol (3)
Glycine (3)
Guanine (3)
Guanosine (3)
Hypoxanthine (3)
IMP (3)
Leucine (3)
NAD+ (3)
Nicotinamide (3)
Phenylalanine (3)
Ribose (3)
UDP (3)
UMP (3)
UTP (3)
Urate (3)
Uridine (3)
1-linolenoyl-GPC (18:3)* (2)
1-linoleoyl-GPC (18:2) (2)

IsPrivate

False (2)

Submitter Keywords

FROG (1)
Manuscript Accepted (1)

First Public Date

2023 (1)

Modelling Approach

Constraint-based model (1)
Ordinary differential equation model (1)

Modification

Not available (1)

Study type

Transcription profiling by array (37)
RNA-seq of coding RNA (19)
Comparative genomic hybridization by array (4)
RNA-seq of non coding RNA (3)
Unknown experiment type (2)
Other (2)
Methylation profiling by array (2)
Methylation profiling by high throughput sequencing (2)
Animal - High-throughput sequencing (1)
ChIP-seq (1)
MicroRNA profiling by array (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2023 (486)
2022 (476)
2021 (468)
2025 (455)
2024 (411)
2020 (342)
2019 (259)
2018 (201)
2017 (158)
2016 (112)
2014 (92)
2015 (90)
2026 (74)
2011 (57)
2013 (51)
2012 (49)
2010 (41)
2009 (19)
2008 (16)
2005 (8)
2007 (6)
2006 (4)
2003 (2)
2004 (1)
2002 (1)
2001 (1)

Lab affiliation

Department of Biology, University of Pennsylvania (3)
Leibniz Institute on Aging, Fritz Lipmann Institute, Beutenbergstrasse 11, 07745 Jena, Germany (2)
Analytical Biochemistry and Proteomics Unit, IIBCE and Institut Pasteur de Montevideo (1)
Associate Research Professor, Institut de recherches cliniques de Montréal (IRCM) Professeure agrégée, Département de biochimie et médecine moléculaire, Université de Montréal Associate Professor, Division of Experimental Medicine, McGill University (1)
Biochemistry III – Institute for Biochemistry, Genetics and Microbiology – University of Regensburg – Germany (1)
CRCM, INSERM, CNRS, Institut Paoli-Calmette, Aix-Marseille University, 27 Boulevard Leï Roure, 13009, Marseille, France (1)
CRCM, INSERM, CNRS, Institut Paoli-Calmettes, Aix-Marseille Univ. , 27 Boulevard Leï Roure, 13009, Marseille, France (1)
CRG/UPF Proteomics Unit (1)
CSO, Structural Genomics Consortium Professor, Medical Biophysics, University of Toronto Sr. Scientist, Princess Margaret Cancer Centre (1)
Center for Neuroscience and Cell Biology of the University of Coimbra, Portugal (1)
Center for Neuroscience and Cell Biology – University of Coimbra (1)
Computational and Experimental Biology Group NOVA MEDICAL SCHOOL / FACULDADE DE CIÊNCIAS MÉDICAS UNIVERSIDADE NOVA DE LISBOA Rua Câmara Pestana, 6-6A | 1150-082 Lisboa Portugal E-mail: rune.matthiesen@nms.unl.pt | www.nms.unl.pt (1)
Computational and Experimental Biology Group NOVA MEDICAL SCHOOL / FACULDADE DE CIÊNCIAS MÉDICASUNIVERSIDADE NOVA DE LISBOARua Câmara Pestana, 6-6A | 1150-082 Lisboa Portugal E-mail: rune.matthiesen@nms.unl.pt | www.nms.unl.pt (1)
Cruzeiro do Sul University (1)
Department of Biology, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA (1)
Department of Medical Sciences iBiMED University of Aveiro (1)
Department of Medical Sciences, Institute of Biomedicine (iBiMED), University of Aveiro, 3810-193 Aveiro, Portugal. (1)
Department of Medical Sciences, Institute of Biomedicine-iBiMED,Univerity of Aveiro, 3810-193 Aveiro,Portugal (1)
Department of Microbiology and Cell Science, Institute of Food and Agricultural Sciences, Genetics Institute, University of Florida, Gainesville, Florida, 32611 (1)
Department of Molecular and Applied Microbiology, Leibniz Institute for Natural Product Research and Infection Biology - Hans Knöll Institute, Jena, Germany (1)
Department of oncology UNIL CHUV Ludwig Institute for Cancer Research Lausanne Office B25A/04/94 Rue du Bugnon 25a, CH-1005 Lausanne (1)
Dysmetabolism in Brain Diseases Lab, CEDOC, NOVA Medical School, Universidade NOVA de Lisboa, Rua CÃƒÂ¢mara Pestana, NÃ‚Âº 6, EdifÃƒÂcio CEDOC II, Office 2.27, 1150-082 Lisboa, Portugal (1)
EMBL, Heidelberg (1)
Escola Superior de Saúde Instituto de Biomedicina - iBiMED Universidade de Aveiro 3810-193 Aveiro Portugal (1)
European Institute of Oncology (1)
Experimental Pathology and Therapeutics Group, IPO Porto Research Center (CI-IPOP), Portuguese Oncology Institute (IPO Porto), 4200-072 Porto, Portugal (1)
Experimental Pathology and Therapeutics Group, Portuguese Institute of Oncology, Porto, Portugal (1)
Faculty of Biology,Molecular Plant Physiology, Universit of Freiburg,Schänzlestr. 1, 79104 Freiburg¸Germany (1)
Faculty of Medicine of the University of Porto Alameda Prof. Hernâni Monteiro 4200-319 Porto, Portugal (1)
Faculty of Medicine of the University of Porto Alameda Prof. Hernâni Monteiro, 4200-319 Porto, Portugal (1)