Ferreira R R - OmicsDI

Show results for

Unknown (3787)
Proteomics (86)
Transcriptomics (72)
Genomics (33)
Metabolomics (9)
Models (2)

Organisms

Chlamydomonas reinhardtii (76)
Marchantia polymorpha subsp. ruderalis (76)
Methylocystis sp. (76)
Porites pukoensis (76)
Bothrops insularis (76)
Bothrops jararaca (76)
Bothrops jararacussu (76)
Bothrops cotiara (76)
Streptomyces coelicolor (76)
Burkholderia ubonensis MSMB22 (76)
Pseudomonas aeruginosa PA103 (76)
Artibeus jamaicensis (76)
Morchella importuna (76)
Homo sapiens (68)
Mus musculus (12)
Saccharomyces cerevisiae (5)
Bos taurus (3)
Burkholderia multivorans (2)
Sus scrofa (2)
Enchytraeus albidus (1)
Vibrio parahaemolyticus (1)
Listeria monocytogenes EGD-e (1)
Trypanosoma brucei brucei (1)
Nicotiana benthamiana (1)
Aspergillus fumigatus (1)
Schistosoma mansoni (1)
Burkholderia cepacia (1)
Streptococcus pneumoniae (1)
Canis lupus familiaris (1)
Notata (1)

Repository

pride (76)
biostudies-arrayexpress (75)
EGA (29)
MassIVE (10)
MetaboLights (8)
BioModels (2)
GNPS (1)
ENA (1)

Tissue

Epithelial cell (7)
Cell culture (7)
Heart (4)
Stomach (3)
Urine (3)
Plant cell (3)
Blood plasma (3)
Culture fluid (2)
Extracellular vesicle (2)
Bone marrow (2)
Leukocyte (2)
Brain (2)
Root (2)
Blood (2)
Aortic endothelial cell line (1)
Regional part of brain (1)
Abdominal aorta aneurysm disease specific cell type (1)
Aortic valve (1)
Diaphragm (1)
Cardiac muscle (1)
Colostrum (1)
Tissue (1)
Malignant cell (1)
Seed (1)
Melanocyte (1)
Bone marrow cell (1)
Pericardial fluid (1)
Embryonic stem cell (1)
Gut (1)
Milk (1)

Disease

Stomach cancer (3)
Cardiovascular system disease (3)
Multiple myeloma (2)
Lung cancer (2)
Urinary bladder cancer (2)
Type 2 diabetes mellitus (2)
Disease free (2)
Breast adenocarcinoma (1)
Colon cancer (1)
Substance-related disorder (1)
Uterine inflammatory disease (1)
Acute myocardial infarction (1)
Aortic valve stenosis (1)
Lung adenocarcinoma (1)
Gastric adenocarcinoma (1)
Prostate adenocarcinoma (1)
Prostate cancer (1)
Melanoma (1)
Heart failure (1)
Parkinson's disease (1)
Leishmaniasis (1)
Influenza (1)
Breast cancer (1)
Wounds and Injuries (1)
Acute leukemia (1)

Technology Type

Mass Spectrometry (76)
Shotgun proteomics (49)
Bottom-up proteomics (14)
Illumina 15K (8)
Mass spectrometry (8)
Affinity purification coupled with mass spectrometry proteomics (8)
Gel-based experiment (7)
Data-independent acquisition (5)
SWATH MS (4)
Data-dependent acquisition (3)
Illumina Genome Analyzer IIx, Illumina Genome Analyzer II, Affymetrix U219 (1)
Illumina_670k - Illuminus, Affymetrix 6.0, Illumina 1.2M (1)
Affinity proteomics (1)
Immunopeptidomics (1)
All-ion fragmentation (1)
HDMSE (1)
Top-down proteomics (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

Illumina HiSeq 2000 (7)
Q Exactive (6)
Illumina NovaSeq 6000 (5)
NextSeq 500 (3)
Illumina HiSeq 2500 (2)
Liquid Chromatography MS - alternating - hilic (2)
Liquid Chromatography MS - positive - reverse phase (2)
MouseWG-6_V2_0_R3_11278593_A (1)
428 [Affymetrix] (1)
Scanning hardware (1)
7890A GC coupled to a 5975C inert XL MSD, with a 7683 series injector (G2614A) (1)
LTQ Orbitrap Velos (1)
LTQ Orbitrap XL ETD (1)
Xevo G2 Q-Tof (1)
LTQ XL (1)
LTQ Orbitrap Elite (1)
Orbitrap Fusion (1)
Q Exactive Plus (1)
Gas Chromatography MS - (1)
MS Imaging - (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2022 (21)
2023 (16)
2011 (16)
2024 (14)
2020 (14)
2010 (12)
2021 (10)
2026 (9)
2016 (9)
2025 (9)
2017 (7)
2014 (7)
2012 (7)
2018 (6)
2013 (5)
2008 (3)
2019 (2)
2015 (2)
2006 (1)
2005 (1)

CHEBI ID

CHEBI:25017 (6)
CHEBI:32816 (6)
CHEBI:28044 (6)
CHEBI:6650 (5)
CHEBI:17234 (5)
CHEBI:27266 (5)
CHEBI:24898 (5)
CHEBI:26271 (5)
CHEBI:28300 (5)
CHEBI:22653 (5)
CHEBI:18186 (5)
CHEBI:29016 (5)
CHEBI:17562 (5)
CHEBI:15428 (5)
CHEBI:16737 (5)
CHEBI:27897 (5)
CHEBI:17368 (5)
CHEBI:30769 (5)
CHEBI:17202 (4)
CHEBI:15846 (4)
CHEBI:17754 (4)
CHEBI:15721 (4)
CHEBI:78320 (4)
CHEBI:27570 (4)
CHEBI:25094 (4)
CHEBI:26986 (4)
CHEBI:22660 (4)
CHEBI:17822 (4)
CHEBI:30915 (4)
CHEBI:16235 (4)

Metabolite Name

Carnitine (4)
GTP (3)
UTP (3)
UDP (3)
IMP (3)
CTP (3)
ATP (3)
CDP (3)
ADP (3)
Uridine (3)
Cytidine (3)
Urate (3)
Hypoxanthine (3)
Guanosine (3)
Guanine (3)
AMP (3)
NAD+ (3)
Nicotinamide (3)
Glycerol (3)
Betaine (3)
Ribose (3)
Glucose (3)
Leucine (3)
Phenylalanine (3)
Glycine (3)
UMP (3)
GDP (3)
Creatinine (3)
PEP (2)
GLU (2)

IsPrivate

False (2)

Submitter Keywords

Manuscript Accepted (1)
FROG (1)

First Public Date

2023 (1)

Modelling Approach

Constraint-based model (1)
Ordinary differential equation model (1)

Modification

Not available (1)

Study type

Transcription profiling by array (37)
RNA-seq of coding RNA (19)
Comparative genomic hybridization by array (4)
RNA-seq of non coding RNA (3)
Unknown experiment type (2)
Other (2)
Methylation profiling by array (2)
Methylation profiling by high throughput sequencing (2)
Animal - High-throughput sequencing (1)
ChIP-seq (1)
MicroRNA profiling by array (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2023 (484)
2022 (476)
2021 (468)
2025 (455)
2024 (404)
2020 (342)
2019 (259)
2018 (201)
2017 (158)
2016 (112)
2014 (92)
2015 (90)
2026 (66)
2011 (56)
2013 (51)
2012 (49)
2010 (40)
2009 (19)
2008 (16)
2005 (8)
2007 (6)
2006 (4)
2003 (2)
2004 (1)
2002 (1)
2001 (1)

Lab affiliation

Department of Biology, University of Pennsylvania (3)
Leibniz Institute on Aging, Fritz Lipmann Institute, Beutenbergstrasse 11, 07745 Jena, Germany (2)
Instiute for Microbiology (1)
Research Group of Microbiology, Vrije Universiteit Brussel, Brussels, Belgium (1)
UnIC@RISE, Department of Surgery and Physiology, Faculty of Medicine, University of Porto, 4200-319 Porto, Portugal (1)
Department of Medical Sciences iBiMED University of Aveiro (1)
Computational and Experimental Biology Group NOVA MEDICAL SCHOOL / FACULDADE DE CIÊNCIAS MÉDICASUNIVERSIDADE NOVA DE LISBOARua Câmara Pestana, 6-6A | 1150-082 Lisboa Portugal E-mail: rune.matthiesen@nms.unl.pt | www.nms.unl.pt (1)
Biochemistry III – Institute for Biochemistry, Genetics and Microbiology – University of Regensburg – Germany (1)
iBiMED, Department of Medical Sciences, University of Aveiro, Aveiro Cardiovascular R&D Centre – UnIC@RISE, Department of Surgery and Physiology, Faculty of Medicine of the University of Porto, Porto, Portugal (1)
Université de Strasbourg, CNRS M3I/UPR9022, Inserm MIR/U1257, Strasbourg, France (1)
Analytical Biochemistry and Proteomics Unit, IIBCE and Institut Pasteur de Montevideo (1)
Human Immunological Diseases Section, Laboratory of Clinical Immunology and Microbiology, Division of Intramural Research, NIAID, NIH, Department of Health and Human Services, Unites States Government (1)
Faculty of Biology,Molecular Plant Physiology, Universit of Freiburg,Schänzlestr. 1, 79104 Freiburg¸Germany (1)
Dysmetabolism in Brain Diseases Lab, CEDOC, NOVA Medical School, Universidade NOVA de Lisboa, Rua CÃƒÂ¢mara Pestana, NÃ‚Âº 6, EdifÃƒÂcio CEDOC II, Office 2.27, 1150-082 Lisboa, Portugal (1)
NMS, CEDOC, NOVA University Lisbon, Portugal (1)
IRCCS Istituto Ortopedico Galeazzi, Laboratorio di Applicazioni Biotecnologiche, Milan, Italy Department of Biomedical, Surgical and DentalSciences, Università degli Studi di Milano, Milan, Italy (1)
Department of Biology, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA (1)
i3S - Institute for Research and Innovation in Health, University of Porto, Portugal (1)
University of São Paulo (1)
Department of Medical Sciences, Institute of Biomedicine-iBiMED,Univerity of Aveiro, 3810-193 Aveiro,Portugal (1)
Universidade Estadual do Norte Fluminense Darcy Ribeiro (UENF), Laboratório de Fisiologia e Bioquímica de Microrganismos (LFBM), Av. Alberto Lamego, 2000, Campos dos Goytacazes, RJ - CEP: 28013-602 (1)
Physiology, NUI Galway (1)
i3S - Instituto de Investigação e Inovação em Saúde, Universidade do Porto, Porto, Portugal Ipatimup - Instituto de Patologia e Imunologia Molecular da Universidade do Porto, Porto, Portugal (1)
Cruzeiro do Sul University (1)
Research Institute for Medicines (iMed.ULisboa), Faculty of Pharmacy, Universidade de Lisboa, Lisbon, Portugal. (1)
University of Bonn, Germany (1)
Instituto de Investigaciones Biológicas, Universidad Nacional de Mar del Plata (UNMDP), CONICET, Mar del Plata (7600), Argentina (1)
Ludwig Institute for Cancer Research Department of Oncology, University hospital of Lausanne, Switzerland (1)
CSO, Structural Genomics Consortium Professor, Medical Biophysics, University of Toronto Sr. Scientist, Princess Margaret Cancer Centre (1)
Faillace Department of Psychiatry and Behavioral Sciences University of Texas Health Science Center at Houston (1)