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TranscriptomicsTranscription profiling of poplar plants grown in different light and temperature cycles
Poplar (Populus trichocarpa, clone Nisqually-1) plants were grown in a Conviron PGR 15 growth chamber using precise control of temperature, light, and humidity. Diurnal (driven) conditions included 12L:12D light cycles and 25C/12C thermocycles in three different combinations. These were: photocycles...
ORGANISM(S): Populus trichocarpa 
2010-01-09 | E-MEXP-2509 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of rice plants grown in different light and temperature cycles
Rice (Oryza sativa, ssp. Japonica, cv. Nipponbare 1) plants were grown in a Conviron PGR 15 growth chamber using precise control of temperature, light, and humidity.
Diurnal (driven) conditions included 12L:12D light cycles and 31C/20C thermocycles in three different combinations. These were: pho...
ORGANISM(S): Oryza sativa 
2010-01-09 | E-MEXP-2506 | biostudies-arrayexpress
TranscriptomicsArabidopsis thaliana strain:Col-0 Transcriptome or Gene expression
Arabidopsis thaliana infiltrated with different strains of DC3000 were used to elicit PTI, ETI, or a disease response compared to a mock control. This experiment was carried out in both Col-0 wild-type plants as well as mutants deficient in non-sense mediated decay via disruption of the promoter of ...
ORGANISM(S): Arabidopsis thaliana 
2014-10-06 | E-MTAB-4416 | biostudies-arrayexpress
TranscriptomicsTranscription profiling by array of rice plants grown in different light and temperature conditions
Rice (Oryza sativa, spp. Indica, cv. 93-11) plants were grown in a Conviron PGR 15 growth chamber using precise control of temperature, light, and humidity.
Diurnal (driven) conditions included 12L:12D light cycles and 31C/20C thermocycles in three different combinations. These were: photocycles ...
ORGANISM(S): Oryza sativa 
2010-07-18 | E-MTAB-275 | biostudies-arrayexpress
TranscriptomicsArabidopsis thaliana strain:Col-0 Transcriptome or Gene expression
We evaluated differential RNA-seq coverage of all TAIR10-annotated introns in Arabidopsis seedlings subjected to heat stress. Transcriptome analyses of plants infected with bacteria suggested the untreated upf1-5 mutant was enriched not only with pathogen defense-associated mRNAs but also with trans...
ORGANISM(S): Arabidopsis thaliana 
2014-12-05 | E-MTAB-4292 | biostudies-arrayexpress
TranscriptomicsHigh resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1
Abiotic stress is a major factor affecting the growth, development, yield and quality in plants including the important biomass yield such as in a bioenergy feedstock crops. In a first of its kind, RNA-seq based high resolution survey of abiotic stress-induced transcriptome of bioenergy feedstock mo...
ORGANISM(S): Populus trichocarpa 
2018-02-23 | E-MTAB-5540 | biostudies-arrayexpress
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