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ProteomicsProteomics of groundwater microbiomes collected from five wells in Alberta, Canada
Groundwater samples were collected from five wells in Alberta, Canada. The sampling location and time are indicated in the table below. 13 to 29 genomes were assembled from each metagenome. Proteomic analyses were performed to investigate which genomes and genes were expressed in each well. Sample I...
ORGANISM(S): uncultured Methylotenera sp. 
2024-05-21 | PXD044305 | Pride
Metaproteomics Metagenome-assembled-genomes Metaproteome Groundwater 
TranscriptomicsGene expression microarray of: 1) Cbx1 null versus revertant (single allele expression), and 2) Jarid2 null versus revertant, mutant mouse ES cells.
Gene expression as measured by microarray, in order to determine the cohort of differentially expressed genes, in each of two different mutant ES cell lines (Cbx1 and Jarid2), each comparing the respective null mutant ES cells to revertant (single allele expression) mutant ES cells. Hybridization wa...
ORGANISM(S): Mus musculus 
2017-09-12 | E-MTAB-5930 | biostudies-arrayexpress
TranscriptomicsTimecourse gene expression microarray analysis of bi-allelic targeted Setdb1 mutant mouse ES cells, comparing cells with one inducible conditional (floxed) null allele and a second constitutive null allele, to control mouse ES cell lines.
Gene expression microarray analysis of Setdb1 inducible conditional (floxed) mutant (Setdb1^tm1c(EUCOMM)Wtsi/Setdb1^tm1Wcs) compared to control (Setdb1^tm1c(EUCOMM)Wtsi/+) ES cell lines, without 4'OHT treatment, and timecourse samples following a 48 hour 4'OHT treatment. The 4'OHT induces Cre recom...
ORGANISM(S): Mus musculus 
2017-09-12 | E-MTAB-5931 | biostudies-arrayexpress
TranscriptomicsDifferential RNA-seq (dRNA-seq) for annotation of transcriptional start sites and small RNAs in Helicobacter pylori
In this study transcriptional start sites (TSS) for H. pylori 26695 were determined To detect the complement of transcripts expressed from H. pylori, we collected three independent biological replicates (B1 – B3) from 26695 wild type strain grown to mid-exponential (OD 600 ~0.6) phase under microaer...
ORGANISM(S): Helicobacter pylori 26695 
2015-07-01 | E-GEOD-67564 | biostudies-arrayexpress
TranscriptomicsPrimary transcriptome map of the hyperthermophilic archaeon ThermococcusM-BM- kodakarensis
Background: Prokaryotes have relatively small genomes, densely-packed and apparently dominated by protein-encoding sequences. However, data now generated by high throughput RNA sequencing (RNA-seq) reveal surprisingly more-complex transcriptomes with many previously unrecognized and unanticipated ...
ORGANISM(S): Thermococcus kodakarensis KOD1 
2014-08-18 | E-GEOD-56262 | biostudies-arrayexpress
TranscriptomicsChIP-chip by array of mouse embryonic stem cells to analyze Jarid2 binding
Analysis of the binding of Jarid2 in mouse ES cells using a Flag tagged version of Jarid2 and a anti-Flag antibody.
ORGANISM(S): Mus musculus 
2010-04-13 | E-TABM-963 | biostudies-arrayexpress
TranscriptomicsGene methylation profile of breast cancer cells.
We compared the gene methylation profile of 26 breast cancer cell lines to identify variations associated with different phenotypes and molecular subtype. The panel includes 13 estrogen receptor negative (ER-) and 13 ER+ cell lines. Four of the ER- cell lines and 5 of the ER+ cell lines are HER2 pos...
ORGANISM(S): Homo sapiens 
2013-07-12 | E-GEOD-44837 | biostudies-arrayexpress
UnknownTherapeutic Impact of Cytoreductive Surgery and Irradiation of Posterior Fossa Ependymoma in the Molecular Era: A Retrospective Multicohort Analysis.
Not available
S-EPMC4962737 | biostudies-literature
TranscriptomicsHedgehog and metabolism
Deregulated accumulation of myofibroblasts (MF) is central to liver fibrosis pathogenesis, but the mechanisms controlling myofibroblast fate remain poorly understood. Here we investigated whether Hedgehog (Hh) signaling regulates MF fate by modulating MF metabolism. We performed microarrays to scree...
ORGANISM(S): Mus musculus 
2012-12-31 | E-GEOD-34949 | biostudies-arrayexpress
TranscriptomicsExpression data from peripheral blood - blood draws at Pre and Post time points of Allergen inhalation challenge (ER and DR)
To determine differential gene expression in peripheral blood of asthmatic individuals undergoing allergen inhalation challenge between early responders (ERs) and dual responders (DRs) following allergen inhalation challenge Blood was collected immediately prior to, and two hours after challenge The...
ORGANISM(S): Homo sapiens 
2013-09-20 | E-GEOD-40240 | biostudies-arrayexpress
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