Fix - OmicsDI

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Unknown (2067)
Genomics (342)
Transcriptomics (181)
Proteomics (172)
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Other (4)
Metabolomics (2)

Organisms

Homo sapiens (54)
Drosophila melanogaster (47)
Mus musculus (47)
Medicago truncatula (7)
Rhizobium leguminosarum (6)
Arabidopsis thaliana (6)
Saccharomyces cerevisiae (4)
Oryza sativa (4)
Drosophila virilis (3)
Glycine max (3)
Zea mays (3)
Paraburkholderia phymatum STM815 (3)
Murinae (2)
Geobacter sulfurreducens (2)
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Rhizobium etli CFN 42 (2)
Synechocystis sp. PCC 6803 (2)
Thalassiosira pseudonana (2)
Macaca mulatta (2)
Arabidopsis (1)
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Rhodopseudomonas palustris (1)
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Salmonella enterica (1)
Xenopus laevis (1)
Anopheles gambiae (1)
Salmonella enterica subsp. enterica serovar Typhimurium (1)
Caenorhabditis elegans (1)

Organisms

Mus musculus (22)
Homo sapiens (12)
soil metagenome (9)
Oryza sativa (4)
Saccharomyces cerevisiae (3)
Arabidopsis thaliana (3)
Paraburkholderia phymatum STM815 (2)
Pantoea ananatis (2)
Medicago truncatula (2)
Lotus japonicus (2)
Salmonella enterica subsp. enterica serovar Typhimurium (2)
Macaca mulatta (2)
Drosophila melanogaster (2)
Frankia sp. R43 (1)
Mesorhizobium sp. N33 (1)
Nitrosopumilus adriaticus (1)
Sulfurovum sp. SCGC AAA036-B05 (1)
Sulfurospirillum sp. SCGC AAA036-P08 (1)
Arcobacter sp. SCGC AAA036-D18 (1)
Pseudomonas pratensis (1)
Paenibacillus mucilaginosus KNP414 (1)
Bradyrhizobium sp. UFLA06-24 (1)
[Clostridium] methylpentosum (1)
Rhodoferax sp. BLA1 (1)
Gluconacetobacter diazotrophicus (1)
Acetoanaerobium sticklandii (1)
Methylorubrum sp. Q1 (1)
Thiomonas intermedia (1)
Bradyrhizobium sp. ORS 285 (1)
Rhizobium etli CFN 42 (1)

Repository

ENA (312)
biostudies-arrayexpress (169)
pride (150)
geo (47)
PAXDB (12)
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jPOST (3)
MassIVE (3)
MetaboLights (2)

Tissue

Cell culture (28)
Epithelial cell (10)
Brain (7)
Permanent cell line cell (5)
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Root (4)
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Urine (3)
Blood (2)
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Disease

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Disease free (4)
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Acral lentiginous melanoma (1)
Acute leukemia (1)
Alzheimer's disease (1)
Aortic valve stenosis (1)
Atherosclerosis (1)
Autism spectrum disorder (1)
Calcium oxalate nephrolithiasis (1)
Cardiovascular system disease (1)
Colon cancer (1)
Coronary artery disease (1)
Female infertility of uterine origin (1)
Liver cancer (1)

Technology Type

Mass Spectrometry (150)
Shotgun proteomics (90)
Bottom-up proteomics (23)
Gel-based experiment (15)
Data-dependent acquisition (11)
SWATH MS (10)
Data-independent acquisition (9)
Chemical cross-linking coupled with mass spectrometry proteomics (8)
Affinity purification coupled with mass spectrometry proteomics (4)
Top-down proteomics (3)
Mass spectrometry (2)
HDMSE (2)
MSE (2)
Metaproteomics (2)
Affinity proteomics (1)
All-ion fragmentation (1)
DiaPASEF (1)
Mass spectrometry imaging (1)

Instrument Platform

Illumina NovaSeq 6000 (19)
ScanArray Express HT [PerkinElmer] (7)
NextSeq 500 (4)
Linux server, HPC cluster (3)
Thermal cycler (Bio-Rad C1000), Agilent 2100 Bioanalyzer, Qubit 4 Fluorometer (3)
Benchtop centrifuge, vortex, NanoDrop or plate reader (for RiboGreen assay), TapeStation (Agilent) (3)
Liquid nitrogen freezer, surgical instruments (3)
NextSeq 550 (3)
Illumina HiSeq 2500 (3)
Illumina HiSeq 2000 (3)
Illumina HiSeq 4000 (3)
Not applicable in this study (2)
Illumina MiSeq (2)
Orbitrap Fusion (2)
Sequel II (1)
PromethION (1)
10X Genomics Chromium Controller (1)
ScanArray [PerkinElmer] (1)
Illumina Genome Analyzer IIx (1)
Axon- GenePix4000B (1)
418 [Affymetrix] (1)
Illumina NovaSeq X Plus (1)
Ion Torrent Proton (1)
Orbitrap Fusion ETD (1)
TripleTOF 6600 (1)
ZenoTOF 7600 (1)
Gas Chromatography MS - (1)
MS Imaging - (1)

Publication Date

2024 (36)
2025 (32)
2022 (31)
2019 (27)
2026 (27)
2015 (25)
2018 (22)
2023 (22)
2016 (22)
2021 (21)
2014 (17)
2010 (16)
2013 (15)
2012 (15)
2008 (15)
2020 (13)
2017 (9)
2009 (8)
2011 (7)
2007 (5)
2006 (5)
2005 (5)
2004 (5)

UNIPROT ID/AC

1433A_SOYBN (6)
1433B_SOYBN (6)
1433C_SOYBN (6)
1433D_SOYBN (6)
3847.GLYMA01G25116.1 (6)
3847.GLYMA01G33803.1 (6)
3847.GLYMA02G01060.2 (6)
P20963 (2)
P35225 (2)
P78552 (2)
P29597 (2)
P14753 (2)
P29350 (2)
P24394 (2)
P42229 (2)
P51692 (2)
O60674 (2)
P01008 (1)
P10646 (1)
P12259 (1)
P00451 (1)
P00740 (1)
P00742 (1)
P08709 (1)
P13726 (1)
P00734 (1)
Q14627 (1)
P22629 (1)
P07321 (1)
O14543 (1)

ENSEMBL ID

ENSMUSG00000029711 (1)
ENSMUSG00000006235 (1)

CHEBI ID

CHEBI:33699 (2)
CHEBI:17634 (2)
CHEBI:17306 (2)
CHEBI:19324 (1)
CHEBI:17680 (1)
CHEBI:27569 (1)
CHEBI:62006 (1)
CHEBI:61993 (1)
CHEBI:28017 (1)
CHEBI:29042 (1)
CHEBI:16856 (1)
CHEBI:15422 (1)
CHEBI:16761 (1)
CHEBI:17665 (1)
CHEBI:24636 (1)
CHEBI:18367 (1)
CHEBI:24406 (1)
CHEBI:189080 (1)
CHEBI:189079 (1)
CHEBI:32433 (1)
CHEBI:26250 (1)
CHEBI:189078 (1)
CHEBI:36946 (1)
CHEBI:24684 (1)
CHEBI:12936 (1)
CHEBI:17327 (1)
CHEBI:28941 (1)
CHEBI:22470 (1)
CHEBI:16024 (1)
CHEBI:17992 (1)

Metabolite Name

Glyceryl glycoside (1)
Dihydroquinazoline (1)
Docosanoic acid (1)
Alpha-tocopherol (1)
Ergostene (1)
D-Trehalose (1)
ALA (1)
Prenol phosphate (1)
Dibenzoxepine (1)
Thiourea (1)
Hydroxybutyric acid (1)
D-Fructose (1)
Ethanolamine (1)
D-Galactose (1)
Phytol (1)
Myo-inositol (1)
Acetate (1)
GABA (1)
Oxalic acid (1)
Glycine (1)
Glycerol (1)
L-Alanine (1)
Propionic acid (1)
D-Lactic acid (1)
Benzoic acid (1)
L-Threonine (1)
Stearic acid (1)
L-Proline (1)
Sorbitol (1)
D-Glucose (1)

First Public Date

2013 (75)
2023 (30)
2024 (29)
2025 (27)
2019 (24)
2021 (23)
2022 (18)
2014 (16)
2018 (15)
2026 (13)
2020 (12)
2015 (12)
2017 (11)
2016 (7)

Modelling Approach

Ordinary differential equation model (5)
Constraint-based model (1)

Study status

Not provided (2)
Completed (2)
Terminated (1)
Recruiting (1)

Lab affiliation

Institute of Integrative Biology of the Cell (I2BC), CEA, CNRS, Université Paris-Sud, Bâtiment 23A, 1 avenue de la Terrasse, F-91198 Gif-sur-Yvette cedex, France. (5)
Department of Biology, University of Fribourg Chemin du Musée 10, 1700 Fribourg, Switzerland T +41 26 300 8631 (3)
Department of Microbiology and Immunology, The Peter Doherty Institute for Infection and Immunity, The University of Melbourne, 792 Elizabeth Street, Melbourne, VIC 3000, Australia. (3)
Department of Structural Biology, Leibniz-Forschungsinstitut für Molekulare Pharmakologie (FMP) (3)
Génétique Quantitative et Évolution - Le Moulon INRA - Univ. Paris Sud - CNRS - AgroParisTech Ferme du Moulon 91190 Gif-sur-Yvette, France (3)
Université Paris-Saclay, INRAE, Univ Paris-Sud, CNRS, AgroParisTech, GQE - Le Moulon, 91190, Gif-sur-Yvette, France (3)
College of Plant Protection, Northwest A&F University (2)
Department of Cell and Molecular Biology, College of Medicine, Chang Gung University, Taoyuan, Taiwan (2)
Department of Microbiology and Molecular Medicine, CMU, University of Geneva, Geneva, Switzerland (2)
Pacific Northwest National Laboratory (2)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (2)
The University of Hong Kong (2)
ULB - Faculty of PHARMACY RD3 - Pharmacognosy, Bioanalysis & Drug Discovery Unit & Analytical Platform of the Faculty of Pharmacy (2)
University of Modena and Reggio Emilia (2)
Associate Professor of Proteomics Departments of Chemistry and Biochemistry | University of Oxford (1)
Associated Researcher (1)
Australian Institute for Bioengineering and Nanotechnolog (AIBN), The University of Queensland (1)
Beijing Proteome Research Center, National Center for Protein Sciences (Beijing) Beijing Institute of Lifeomics， Beijing 102206 P.R. China. (1)
Beijing proteome research center, Beijing, China (1)
Bio-X Institutes, Key Laboratory for the Genetics of Development and Neuropsychiatric Disorders (Ministry of Education), Shanghai Key Laboratory of Psychotic Disorders, and Brain Science and Technology Research Center, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai 200240, China. (1)
Biotechnology and Bioengineering Center, Deptartment of Microbiology, Medical College of Wisconsin (1)
Biozentrum der LMU München Pflanzenwissenschaften Großhaderner Str. 2-4 82152 Planegg-Martinsried (1)
CEDOC, NMS, Lisbon, Portugal (1)
CNRS (1)
CRG, UPF (1)
Center for Excellence in Molecular Cell Science, CAS (1)
Center for Genomic Regulation, Universitat Pompeu Fabra, 08003 Barcelona, Spain (1)
Center for Microbial Communities Department of Chemistry and Bioscience Aalborg University (1)
Center of Excellence in Systems Biology, Research affairs, Faculty of Medicine, Chulalongkorn University (1)
Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Øster Voldgade 5-7, 1350, Copenhagen, Denmark (1)

Keyword

C-REX (2)
Veliparib (1)
Adenoma, polyp, colonoscopy. (1)
Adaptive anastomoses (1)
Post-Market (1)
Adaptive anastomosis (1)
Temozolomide (1)
Metastatic (1)

IsPrivate

False (10)

Model Flag

Non Kinetic (2)

Classification

bacteria (23)
viruses (1)

Modification

+3amu) (4)
4-tetrahydrothiazine-3-carboxylic acid (1)
4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (54)
RNA-seq of coding RNA (30)
ChIP-seq (18)
ChIP-chip by array (16)
Other (9)
Interventional (6)
DNA-seq (5)
RNA-seq of coding RNA from single cells (5)
RNAi profiling by array (4)
Hi-C (4)
CUT&RUN (4)
Unknown experiment type (3)
Transcription profiling by tiling array (3)
Capture-C (3)
ATAC-seq (2)
Methylation profiling by array (2)
RNA-seq of total RNA (2)
Animal - High-throughput sequencing (1)
Comparative genomic hybridization by array (1)
Ribo-seq (1)
MicroRNA profiling by array (1)

Release Date

2022 (249)
2021 (249)
2023 (223)
2025 (184)
2020 (171)
2024 (170)
2019 (142)
2018 (123)
2017 (116)
2014 (89)
2015 (88)
2016 (83)
2013 (52)
2012 (50)
2011 (38)
2010 (33)
2026 (32)
2008 (32)
2009 (23)
2007 (20)
2005 (15)
2004 (14)
2006 (13)
2001 (6)
1998 (6)
2000 (5)
1999 (5)
2003 (3)
2002 (2)

Location

China (2)
United Kingdom (1)
South Korea (1)
Sweden (1)
United States (1)

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Gene expression during root nodule development in wild type and Fix- mutant of Lotus japonicus

PRJNA532767 | ENA

Platelet-targeted hyperfunctional FIX gene therapy for hemophilia B mice even with preexisting anti-FIX immunity.

Not available

S-EPMC7948262 | biostudies-literature

The Molecular Basis of FIX Deficiency in Hemophilia B.

Not available

S-EPMC8911121 | biostudies-literature

PERI-FIX 2021

PRJNA1062801 | ENA

Rnf and Fix Have Specific Roles during Aerobic Nitrogen Fixation in Azotobacter vinelandii.

Not available

S-EPMC9469703 | biostudies-literature

Field Study and Correlative Studies of Factor IX Variant FIX-R338L in Participants Treated with Fidanacogene Elaparvovec.

Not available

S-EPMC11436294 | biostudies-literature

Development of iPSC-derived FIX-secreting hepatocyte sheet as a novel treatment tool for hemophilia B treatment.

Not available

S-EPMC11849234 | biostudies-literature

Proteomic screening for potentially amyloidogenic proteins of Rhizobium leguminosarum in effective and ineffective root nodules of Pisum sativum L.

We studied potentially amyloidogenic proteins (e.g. protein forming polymers and complexes that are resistant to treatment with ionic detergents) in root nodules formed by two lines of garden pea (P. sativum L.): Sprint-2 (Fix+ phenotype) and Sprint-2Fix- (sym31) (Fix- phenotype) inoculated with the...

ORGANISM(S): Pisum sativum (Garden pea) Rhizobium leguminosarum bv. viciae

2022-10-25 | PXD035724 | Pride

Integration-deficient lentiviral vectors expressing codon-optimized R338L human FIX restore normal hemostasis in Hemophilia B mice.

Not available

S-EPMC3944325 | biostudies-literature

Multimodal mechanisms of pathogenic variants in the signal peptide of FIX leading to hemophilia B.

Not available

S-EPMC11321298 | biostudies-literature

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