Fkbp - OmicsDI

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Metabolite Name

Aceglutamide (2)
Glu-Thr (2)
Taurine (2)
L-Serine (2)
Stachyose (2)
Swertiamarin (1)
(-)-Epigallocatechin Gallate (1)
Camphoric Acid, (+)- (1)
Thioacetic acid (1)
1,2,3,6-tetragalloylglucose (1)
Kaempferol-3-O-beta-glucopyranosyl-7-O-alpha-rhamnopyranoside (1)
SACCHARATE (1)
1,1-Dimethyl-2,7-dibromo-4a-(bromomethyl)-1,2,3,4,4a,9a-hexahydro-9H-xanthene (1)
Propyl 4-(3-bromo-4-methoxyphenyl)-2,7,7-trimethyl-5-oxo-1,4,5,6,7,8-hexahydroquinoline-3-carboxylate (1)
(2Z)-4,6-dihydroxy-2-[(4-hydroxy-3,5-dimethoxyphenyl)methylidene]-1-benzofuran-3-one (1)
4,4-Thiodianiline (1)
Harpagide (1)
Ethyl Dodecanoate (1)
1-(9Z,12Z-Octadecadienoyl)-2-hydroxy-sn-glycero-3-phosphoethanolamine (1)
PMPA (1)
Dihydrocitrinone (1)
Dibenzyl disulfide (1)
Syringate (1)
Kutkoside (1)
L-SORBOSE (1)
GLUCONIC ACID (1)
Benzoylpaeoniflorin (1)
3,5-Dihydroxy-4-methoxybenzoic acid (1)
Rotenolone (1)
LysoPE(14_0_0_0) (1)

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2026 (14)
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Classification

protozoa (6)

Study type

Transcription profiling by array (46)
RNA-seq of coding RNA (17)
RNA-seq of non coding RNA (6)
ChIP-seq (5)
RNA-seq of coding RNA from single cells (5)
Unknown experiment type (3)
Comparative genomic hybridization by array (3)
ATAC-seq (3)
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MNase-seq (2)
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Other (2)
Methylation profiling by array (2)
High-throughput sequencing (1)
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ChIP-chip by array (1)
Hi-C (1)

Release Date

2022 (30)
2023 (28)
2014 (24)
2017 (24)
2021 (23)
2025 (22)
2012 (21)
2011 (21)
2024 (21)
2013 (19)
2018 (18)
2026 (17)
2008 (16)
2019 (15)
2016 (15)
2020 (14)
2015 (14)
2009 (14)
2010 (11)
2007 (6)
2005 (5)
2006 (3)
2004 (3)
2003 (3)
1998 (3)
2002 (2)
2001 (2)
1999 (2)
2000 (1)

Lab affiliation

1 Division of Chemistry I, Department of Medical Biochemistry and Biophysics, Karolinska Institutet, SE-17 177 Stockholm, Sweden 2 Chemical Proteomics Unit, Science for Life Laboratory (SciLifeLab), SE-17 177 Stockholm, Sweden 3 Chemical Proteomics, Swedish National Infrastructure for Biological Mass Spectrometry (BioMS), SE-17 177 Stockholm, Sweden (1)
1. University of Victoria Genome BC Proteomics Centre, University of Victoria, Victoria, British Columbia, Canada 2. Segal Cancer Proteomics Centre, Lady Davis Institute, Jewish General Hospital, McGill University, Montreal, Quebec, Canada 3. Department of Biochemistry and Microbiology, University of Victoria, Victoria, British Columbia, Canada 4. Gerald Bronfman Department of Oncology, Jewish General Hospital, Montreal, Quebec, Canada (1)
Bernhard Nocht Institute for Tropical Medicine, Hamburg, Germany (1)
Chemical Proteomics, Division of Chemistry I, Department of Medical Biochemistry and Biophysics Karolinska Institutet, Stockholm, Sweden (1)
Department of Immunology, College of Basic Medical Science, China Medical University, Shenyang, Liaoning 110122, China (1)
Institute of Applied Biosciences, Center for Research and Technology - Hellas, 6th km Charilaou - Thermi rd. 570 01 Thermi Thessaloniki (1)
Institute of Biochemistry and Molecular Biology Department of Biochemistry, University of Freiburg, Germany (1)
Institute of Biochemistry and Molecular Biology, ZBMZ, Faculty of Medicine, University of Freiburg, Freiburg 79104, Germany CIBSS - Centre for Integrative Biological Signalling Studies, University of Freiburg, Freiburg 79104, Germany (1)
Institute of Molecular Biology gGmbH, Mainz, Germany Institute of Developmental Biology and Neurobiology (IDN), Johannes Gutenberg-Universität Mainz, Germany (1)
International Institute of Molecular and Cell Biology in Warsaw (IIMCB), 02109, Warsaw, Poland (1)
Living Systems Institute, University of Exeter, EX4 4QD, UK (1)
Max Perutz Labs, Vienna BioCenter, University of Vienna Dr. Bohr-Gasse 9/5, 1030 Vienna, Austria (1)
Max Planck Institute for Molecular Genetics, Berlin, Germany (1)
Max-Planck-Institut für Molekulare Pflanzenphysiologie Wissenschaftspark Golm Am Mühlenberg 1 14476 Potsdam, Germany (1)
Parasitology Section Bernhard Nocht Institute for Tropical Medicine Bernhard-Nocht-Str. 74 20359 Hamburg Germany (1)
Systems Biology Ireland, University College Dublin (1)

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Ago and Fkbp project

PRJNA744096 | ENA

RNA-Seq of UPF1 depletion in human colorectal adenocarcinoma cell line HCT116 or human embryonic kidney cell line HEK293 via the dTAG degron system

UPF1 is a multi-domain RNA helicase that constantly monitors the transcriptome by non-specifically binding to mRNAs, dissociating from non-target transcripts, and initiating degradation on selected target RNAs via multiple proposed pathways such as nonsense-mediated decay (NMD). NMD is a translation...

ORGANISM(S): Homo sapiens

2025-09-01 | E-MTAB-13829 | biostudies-arrayexpress

Controlled ErbB receptor dimerization

In order to better understand signaling events following receptor dimerization involving HER2, we have generated an experimental system in which ErbB dimerization can be controlled. We used gene expression microarrays to identify genes and pathways that are differentially activated by HER2 homodimer...

ORGANISM(S): Homo sapiens

2011-05-13 | E-GEOD-22288 | biostudies-arrayexpress

RNA catabolism restricts ERV expression and functionalization [FKBP RNA-Seq]

PRJNA993166 | ENA

PUP-IT proximity-labeling of Arabidopsis TOR via yeast FKBP (constitutive expression)

PUP-IT proximity labeling of Arabidopsis Target of Rapamycin Complex (TORC), using the yeast FKBP protein (P20081) as a bait with and without rapamycin treatment and constitutive expression of FLAG::PUP(E). The sample metadata, sequence database and fragpipe workflow are uploaded under the 'Metadata...

ORGANISM(S): Arabidopsis Thaliana (ncbitaxon:3702)

2025-01-16 | MSV000096864 | MassIVE

An improved reversibly dimerizing mutant of the FK506-binding protein FKBP.

Not available

S-EPMC5058350 | biostudies-literature

Redesigning an FKBP-ligand interface to generate chemical dimerizers with novel specificity.

Not available

S-EPMC27912 | biostudies-literature

Conformational Dynamics in FKBP Domains: Relevance to Molecular Signaling and Drug Design.

Not available

S-EPMC5592401 | biostudies-literature

Proteome analysis of ROF-FKBP mutants reveals functional relations between heat stress responses, plant development and protein quality control during heat acclimation in A. thaliana

In the present study, a differential screening following heat stress acclimation was performed in A. thaliana WT and ROF-FKBP mutated plants, using mass spectrometry, and the results were used to understand and analyze the effect of the ROF PPIases during thermotolerance acquisition in plants. Our d...

ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress)

2024-01-26 | PXD044216 | Pride

CUT&RUN analysis for phospho-MYB and active histone marks in FKBP-MYB Jurkat cells.

PRJNA1111141 | ENA

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