Flag tagged - OmicsDI

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Genomics (1033)
Proteomics (729)
Transcriptomics (592)
Unknown (452)
Other (21)
Metabolomics (4)
Methylation profiling (1)
Multiomics (1)

Organisms

Homo sapiens (302)
Mus musculus (205)
Caenorhabditis elegans (196)
Saccharomyces cerevisiae (73)
Drosophila melanogaster (36)
Arabidopsis thaliana (33)
Escherichia coli (14)
Schizosaccharomyces pombe (11)
Rattus norvegicus (9)
Escherichia coli str. K-12 substr. MG1655 (7)
Salmonella enterica subsp. enterica serovar Typhimurium (5)
Zea mays (5)
Streptomyces venezuelae (5)
Mycobacterium tuberculosis (4)
Escherichia coli K-12 (3)
Aspergillus fumigatus (3)
Ovis aries (3)
Sinorhizobium meliloti (3)
Tetrahymena thermophila (2)
Bacillus subtilis subsp. subtilis str. 168 (2)
Mycobacterium tuberculosis CDC1551 (2)
Streptococcus pyogenes (2)
Corynebacterium glutamicum (2)
Streptomyces coelicolor A3(2) (2)
Populus trichocarpa (2)
Helicobacter pylori (2)
Francisella tularensis (2)
Bacillus subtilis (2)
Gallus gallus (2)
Candida albicans (2)

Organisms

Homo sapiens (277)
Mus musculus (142)
Caenorhabditis elegans (47)
Saccharomyces cerevisiae (44)
Drosophila melanogaster (29)
Arabidopsis thaliana (18)
Schizosaccharomyces pombe (12)
Escherichia coli (9)
Rattus norvegicus (7)
Corynebacterium glutamicum R (4)
Trypanosoma brucei brucei (3)
Streptomyces venezuelae (3)
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 (3)
Pseudomonas aeruginosa (3)
Streptomyces venezuelae ATCC 10712 (2)
Nostoc sp. PCC 7120 = FACHB-418 (2)
Escherichia coli str. K-12 substr. MG1655 (2)
Neurospora crassa (2)
Xenopus laevis (2)
Mycobacterium tuberculosis H37Rv (2)
Nakaseomyces glabratus (2)
Sinorhizobium meliloti (2)
Bacillus subtilis (2)
Bombyx mori (2)
Staphylococcus aureus (2)
Capra hircus (2)
Legionella pneumophila str. Paris (1)
Campylobacter jejuni subsp. jejuni CG8421 (1)
Neisseria meningitidis 8013 (1)
Brucella suis 1330 (1)

Repository

biostudies-arrayexpress (739)
ENA (719)
pride (602)
geo (190)
MassIVE (51)
iProX (45)
jPOST (31)
MetaboLights (2)
GNPS (1)
NODE (1)

Tissue

Cell culture (234)
Epithelial cell (70)
Permanent cell line cell (51)
Embryonic stem cell (31)
Kidney (18)
Early embryonic cell (15)
HeLa cell (13)
Fibroblast (11)
Whole body (11)
Embryo (10)
Brain (9)
HEK-293T cell (8)
Plant cell (8)
Cell suspension culture (6)
T cell (6)
Hepatocyte (5)
Kidney cell (5)
Liver (5)
Blood (4)
Blood cell (4)
JURKAT cell (4)
Seedling (4)
Stem cell (4)
B cell (3)
Cell line cell (3)
Diploid cell (3)
Kidney epithelial cell (3)
Leaf (3)
Macrophage (3)
Cell line (1)

Disease

Disease free (27)
Breast cancer (11)
Acute leukemia (9)
Cervix carcinoma (7)
Colon cancer (5)
Toxoplasmosis (4)
Brain glioblastoma multiforme (3)
Glioblastoma (3)
Cardiovascular system disease (2)
Cervical adenocarcinoma (2)
Cystic fibrosis (2)
Epilepsy (2)
Facioscapulohumeral muscular dystrophy (2)
Kidney cancer (2)
Lung adenocarcinoma (2)
Lymphoma (2)
Melanoma (2)
Type 2 diabetes mellitus (2)
Xenografts with H1299 cell line (1)
Osteosarcoma (1)
Lung cancer (1)
Adenocarcinoma (1)
Alveolar rhabdomyosarcoma (1)
Amyotrophic lateral sclerosis (1)
Autism spectrum disorder (1)
Bone osteosarcoma (1)
Charcot-Marie-Tooth disease axonal type 2C (1)
DNA (1)
Frontotemporal dementia (1)
Human immunodeficiency virus infectious disease (1)

Technology Type

Mass Spectrometry (602)
Affinity purification coupled with mass spectrometry proteomics (303)
Shotgun proteomics (165)
Bottom-up proteomics (97)
Gel-based experiment (69)
Data-dependent acquisition (67)
Data-independent acquisition (16)
Chemical cross-linking coupled with mass spectrometry proteomics (11)
Affinity proteomics (10)
Top-down proteomics (9)
SRM/MRM (6)
SWATH MS (6)
All-ion fragmentation (2)
DiaPASEF (2)
Mass spectrometry assay (1)
Mass spectrometry (1)
Mass spectrometry imaging (1)
Proteogenomics (1)

Instrument Platform

Illumina HiSeq 2000 (15)
LTQ (8)
NextSeq 500 (7)
Orbitrap Eclipse (6)
Orbitrap Fusion (5)
Q Exactive (5)
Illumina MiSeq (4)
LTQ Orbitrap (4)
LTQ Orbitrap Velos (4)
Illumina NovaSeq X (3)
Illumina HiSeq 1500 (3)
Illumina NovaSeq 6000 (3)
LTQ Orbitrap Velos Pro (3)
LTQ Orbitrap Elite (3)
Q Exactive HF (3)
Illumina HiSeq 2500 (2)
ThermoFisher Fusion Lumos mass spectrometer (2)
Illumina Genome Analyzier Iix (1)
Agilent DNA Microarray Scanner Model # G2505B (1)
Affymetrix GeneAtlas (1)
Helicos (1)
Agilent DNA Microarray Scanner Model # G2505C (1)
Illumina Genome Analyzer IIx (1)
Illumina Genome Analyzer II (1)
NextSeq 1000 (1)
Illumina HiSeq X (1)
NextSeq 2000 (1)
Illumina HiSeq 3000 (1)
LTQ Orbitrap Discovery (1)
LTQ XL (1)

Publication Date

2013 (163)
2025 (137)
2010 (130)
2023 (122)
2026 (110)
2022 (105)
2024 (96)
2012 (93)
2015 (89)
2014 (84)
2011 (84)
2021 (78)
2020 (72)
2019 (64)
2016 (63)
2018 (47)
2008 (31)
2017 (25)
2009 (25)
2006 (13)
2005 (13)
2007 (6)
2004 (5)
2003 (2)
2002 (1)

CHEBI ID

CHEBI:17084 (1)

Metabolite Name

2-Hydroxyglutarate (1)

First Public Date

2014 (93)
2025 (78)
2024 (64)
2019 (63)
2023 (58)
2020 (52)
2022 (46)
2018 (46)
2013 (43)
2026 (38)
2021 (37)
2016 (36)
2017 (35)
2015 (28)
2011 (2)

Classification

bacteria (41)
fungi (6)
protozoa (4)

Modification

4-tetrahydrothiazine-3-carboxylic acid (3)
-17.026549 (1)
15.994915 (1)
3x(2)H labeled N6-acetyl-L-lysine (1)
42.010565 (1)
4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (244)
ChIP-seq (234)
RNA-seq of coding RNA (58)
Unknown experiment type (49)
ChIP-chip by tiling array (38)
Other (32)
ChIP-chip by array (25)
RNA-seq of non coding RNA (18)
Transcription profiling by tiling array (15)
Comparative genomic hybridization by array (9)
High-throughput sequencing (3)
RIP-seq (3)
Methylation profiling by array (3)
Methylation profiling by high throughput sequencing (2)
RNA-seq of total RNA (2)
RIP-chip by array (1)
CLIP-Seq (1)
Cell line - High-throughput sequencing (1)

Release Date

2013 (182)
2010 (141)
2012 (117)
2011 (101)
2014 (97)
2015 (95)
2016 (52)
2021 (38)
2008 (37)
2009 (36)
2018 (33)
2023 (32)
2017 (29)
2020 (28)
2019 (27)
2025 (26)
2022 (22)
2024 (20)
2006 (18)
2005 (16)
2007 (10)
2004 (8)
2026 (6)
2003 (5)
1998 (5)
2002 (4)
2001 (3)
1999 (2)
2000 (1)

Lab affiliation

EDyP (9)
Chair of Biochemistry II, Theodor Boveri-Institute, Biocenter, University of Würzburg, Würzburg, Germany (5)
Institute of Molecular Systems Biology, ETH Zurich, 8093 Zurich, Switzerland Faculty of Science, University of Zurich, Zurich, Switzerland (5)
State Key Laboratory of Biocatalysis and Enzyme Engineering, School of Life Sciences, Hubei University, Wuhan,Hubei 430062, China (5)
Biochemistry Center Heidelberg, University of Heidelberg, Germany (4)
Immunology Research Center, National Health Research Institutes, Zhunan, Taiwan Department of Pathology & Immunology, Baylor College of Medicine, Houston, Texas (4)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, the Netherlands (3)
Institute for Genetics, University of Cologne, 50674 Cologne, Germany (3)
Laboratory of Fungal Pathogenesis, Centre for DNA Fingerprinting and Diagnostics (CDFD), Hyderabad, India (3)
Medical bioanalytics Institute for ophthalmic research Eberhard-Karls-University Tuebingen (3)
Pathology - Lab & Genomic Medicine (LGM); Washington University School of Medicine (3)
The University of Melbourne (3)
1State Key Laboratory of Protein and Plant Gene Research, School of Life Sciences, Peking University, Beijing, China 2Department of Biochemistry and Molecular Biology, School of Life Sciences, Peking University, Beijing, China, Peking University, Beijing 100871, China (2)
Babraham Institute Cambridge UK (2)
Biomolecular characterization unit, Center for Sustainable Resource Science, RIKEN (2)
Center for Genomic Regulation Differentiation and Cancer Passeig Maritim 37-49 Barcelona 08003 SPAIN (2)
Cornell University (2)
Department of Biochemistry and Molecular Biology, University of Georgia, Athens (GA), USA. (2)
Department of Biochemistry, University of Oxford (2)
Department of Biochemistry, University of Regina, Regina, Saskatchewan S4S 0A2, Canada. (2)
Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center (2)
Department of Experimental Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA (2)
Department of Molecular Biology, Radboud Institute for Molecular Life Sciences, Radboud University, Nijmegen, The Netherlands (2)
Department of Molecular, Cellular and Developmental Biology. Yale University, 260 Whitney Ave, New Haven, CT. 06520, USA (2)
Dept. of Biochemistry & Molecular Biology, Complex Carbohydrate Research Center, Center for Tropical and Emerging Global Diseases, University of Georgia, Athens, GA 30602, Dept. of Biochemistry & Molecular Biology, University of Oklahoma Health Sciences Center, Oklahoma City, OK 73104 USA (2)
Director, Translational Proteomics Research Unit, IRCM Director, Biomarker Pipeline for Precision Medicine Strategic Initiative Full IRCM Research Professor Full Research Professor, Department of Biochemistry and Molecular Medicine (accreditation for the Molecular Biology Programs), Université de Montréal Holder of the Bell-Bombardier Chair of Excellence Person in charge of responsible conduct of research, IRCM (2)
Division of Virology, Department of Pathology, University of Cambridge, Cambridge, UK (2)
ESPCI Paris, Université PSL, UAR2051 CNRS, 75005, Paris, France (2)
Eberhard Karls University Tübingen, Institute for Ophthalmic Research (2)
Faculty of Chemistry and Pharmacy, Biochemistry II, Theodor-Boveri-Institute, University of Wuerzburg, Germany (2)

2833 Results

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