Follicle - OmicsDI

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Unknown (5736)
Transcriptomics (1824)
Genomics (1714)
Proteomics (125)
Other (33)
Metabolomics (25)
Methylation profiling (22)
Models (6)
Clinical (3)
Genomic (1)

Organisms

Mus musculus (911)
Homo sapiens (611)
Bos taurus (129)
Drosophila melanogaster (100)
Rattus norvegicus (88)
Gallus gallus (39)
Sus scrofa (32)
Medicago truncatula (26)
Capra hircus (25)
Arabidopsis thaliana (18)
Ovis aries (16)
Macaca mulatta (15)
Oncorhynchus mykiss (8)
Bos indicus (8)
Rhizobium leguminosarum (7)
Solea senegalensis (6)
Bubalus bubalis (5)
Equus caballus (5)
Schizosaccharomyces pombe (4)
Tetrahymena thermophila (3)
Lotus japonicus (3)
Glycine max (3)
Escherichia coli (3)
Sinorhizobium meliloti 1021 (2)
Macaca nemestrina (2)
Phaeodactylum tricornutum (2)
Populus trichocarpa (2)
Rattus rattus (2)
Triticum aestivum (2)
Mammalia (1)

Organisms

Mus musculus (599)
Homo sapiens (216)
Bos taurus (74)
Drosophila melanogaster (57)
Rattus norvegicus (47)
Capra hircus (37)
Gallus gallus (33)
Ovis aries (20)
Sus scrofa (19)
Danio rerio (14)
Macaca mulatta (8)
Equus caballus (6)
Bos grunniens (4)
Anser cygnoides (4)
Aedes albopictus (3)
Coturnix japonica (3)
Oryctolagus cuniculus (3)
Pimephales promelas (2)
Anser (2)
Anas platyrhynchos (2)
Macaca fascicularis (2)
Oncorhynchus mykiss (2)
Bubalus bubalis (2)
Felis catus (2)
unidentified (2)
Poeciliopsis presidionis (1)
Poeciliopsis turneri (1)
Ceratotherium simum (1)
Acomys cahirinus (1)
Ceratotherium simum simum (1)

Repository

ENA (1485)
geo (1082)
biostudies-arrayexpress (980)
pride (66)
EGA (43)
iProX (29)
MetaboLights (24)
MassIVE (18)
BioModels (6)
ExpressionAtlas (5)
PAXDB (5)
jPOST (3)
NODE (2)
PeptideAtlas (2)
dbGaP (1)
GNPS (1)
PanoramaPublic (1)

Tissue

Ovarian follicle (12)
Colon (3)
Alveolar macrophage (1)
Peyer's patch (1)
Whole embryo (1)
Inner lining mucosa of the abomasum (1)
Placenta (including membranes) (1)
Skin of back (1)
Ventricle (1)
Corpus luteum (1)
Prescapular lymph node (1)
Cardiac ventricle (1)
Skin from side (1)
Rumen (1)
Abomasum (1)
Muscle biceps (1)
Muscle long dorsal (1)
Biceps (1)
Longissimus thoracis muscle (1)
Rectum (1)
Mesenteric lymph node (1)
Brainstem (1)
Tonsil (1)
Omentum (1)
Caecum (1)
Duodenum (1)
Epididymis (1)
Uterine cervix (1)
Telencephalon (1)
Mammary gland (1)

Disease

Alopecia (3)
Follicular lymphoma (2)
Normal (2)
Ovarian disease (1)
Toxicity (1)
Yersinia enterocolitica uninfected (1)
Mantle cell lymphoma (1)
Oropharynx squamous-cell carcinoma in DiseaseLocation oropharynx has DiseaseStaging lymph node negative (N0) (1)
Rett syndrome (1)
Myasthenia gravis (seropositive patient with low thymic hyperplasia) (1)
Embryonic lethal at day 8.5 to 9.5 (1)
Papillary Carcinoma (1)
Follicular thyroid carcinoma (1)
Myelolipoma (1)
Basal cell carcinoma, Gorlin-Goltz syndrome (1)
Giant cell glioblastoma (1)
Diffuse large B cell lymphoma (1)
ARR1-SRDX (1)
Diminished Ovarian Reserve (DOR) (1)
Lung cancer (1)
Patients suffering from tumors such as colorectal, lung and pancreatic cancer and precancerous disease (1)
Extramedullary plasmacytoma (1)
Diffuse large B-cell lymphoma (1)
Acute leukemia (1)
Atopic dermatitis (1)
Brain cancer (1)
Breast cancer (1)
Colon cancer (1)
Disease free (1)
Female reproductive system (1)

Technology Type

Mass Spectrometry (66)
Shotgun proteomics (32)
Mass spectrometry (17)
Bottom-up proteomics (13)
Gel-based experiment (8)
Mass spectrometry assay (7)
Affinity purification coupled with mass spectrometry proteomics (7)
Data-dependent acquisition (4)
SWATH MS (3)
Top-down proteomics (3)
Data-independent acquisition (2)
Illumina HT12, Affymetrix miRNA 4.0 Array (1)
ILLUMINA, Illumina HiSeq 2500 (1)
Illumina HumanMethylation 450K (1)
ILLUMINA, Illumina HiSeq 2000 (1)
Illumina HiSeq 2500, Illumina HiSeq 2000 (1)
NMR spectroscopy (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Proteogenomics (1)
SRM/MRM (1)

Instrument Platform

Illumina NovaSeq 6000 (21)
Illumina HiSeq 2500 (11)
Illumina HiSeq 2000 (11)
Illumina HiSeq 4000 (8)
NextSeq 500 (7)
G2565AA DNA microarray scanner [Agilent] (4)
Bio-Rad CFX96 Real-time System (2)
Scanning hardware (2)
NextSeq 2000 (2)
Nikon Eclipse Ti2 with brightfield and fluorescence capacity (TRITC) (1)
Leica Biosystems Cryostat (1)
BD Rhapsody (1)
Linux server, HPC cluster (1)
Not applicable in this study (1)
Thermal cycler (Bio-Rad C1000), Agilent 2100 Bioanalyzer, Qubit 4 Fluorometer (1)
Benchtop centrifuge, vortex, NanoDrop or plate reader (for RiboGreen assay), TapeStation (Agilent) (1)
Liquid nitrogen freezer, surgical instruments (1)
BD LSRFortessa (1)
MACS Whole Skin Dissociation Kit (1)
FACSAria (BD) (1)
Scanner Genechip 3000 7G (1)
Mouse Drawer System (1)
AB SOLiD 4 System (1)
428 [Affymetrix] (1)
ScanArray 5000 [PerkinElmer] (1)
GenePix Professional 4200A [Axon Instruments] (1)
BAS-5000 [FUJIFILM] (1)
Illumina Genome Analyzer IIx (1)
418 [Affymetrix] (1)
G2565BA DNA microarray scanner [Agilent] (1)

Publication Date

2011 (161)
2015 (144)
2014 (142)
2010 (141)
2024 (133)
2026 (133)
2012 (128)
2013 (121)
2023 (116)
2016 (112)
2021 (106)
2025 (105)
2022 (97)
2008 (95)
2017 (88)
2009 (81)
2020 (72)
2018 (71)
2019 (68)
2007 (44)
2005 (24)
2006 (13)
2004 (4)
2003 (2)
2002 (1)

UNIPROT ID/AC

1433B_HUMAN (5)
1433E_HUMAN (5)
1433F_HUMAN (5)
1433G_HUMAN (5)
1433S_HUMAN (5)
1433T_HUMAN (5)
1433Z_HUMAN (5)
2AAA_HUMAN (5)
2ABA_HUMAN (5)
2ABD_HUMAN (5)
6PGD_HUMAN (5)
6PGL_HUMAN (5)
A0A0A6YYA0_HUMAN (5)
A16A1_HUMAN (5)
A1AT_HUMAN (5)
A2ML1_HUMAN (5)
ACADV_HUMAN (5)
ACLY_HUMAN (5)
ACTA_HUMAN (5)
ACTBL_HUMAN (5)
ACTB_HUMAN (5)
ACTG_HUMAN (5)
P22888 (1)
P01229 (1)
P09529 (1)
P08476 (1)
P30968 (1)
P01148 (1)
P23945 (1)
P01215 (1)

ENSEMBL ID

ENSECAG00000000106 (1)
ENSECAG00000000207 (1)
ENSECAG00000000223 (1)
ENSECAG00000000370 (1)
ENSECAG00000000384 (1)
ENSECAG00000000511 (1)
ENSECAG00000000539 (1)
ENSECAG00000000548 (1)
ENSECAG00000000782 (1)
ENSECAG00000000817 (1)
ENSECAG00000000841 (1)
ENSECAG00000000939 (1)
ENSECAG00000001810 (1)
ENSECAG00000001897 (1)
ENSECAG00000002353 (1)
ENSECAG00000002920 (1)
ENSECAG00000003345 (1)
ENSECAG00000003398 (1)
ENSECAG00000004180 (1)
ENSECAG00000004201 (1)
ENSECAG00000004903 (1)
ENSECAG00000004925 (1)
ENSECAG00000004960 (1)
ENSECAG00000004973 (1)
ENSECAG00000005292 (1)
ENSECAG00000005550 (1)
ENSECAG00000006095 (1)
ENSECAG00000006429 (1)
ENSECAG00000006452 (1)
ENSECAG00000006745 (1)

CHEBI ID

CHEBI:15741 (5)
CHEBI:16811 (4)
CHEBI:15428 (4)
CHEBI:16865 (4)
CHEBI:16449 (4)
CHEBI:26984 (3)
CHEBI:17822 (3)
CHEBI:26271 (3)
CHEBI:28757 (3)
CHEBI:16750 (3)
CHEBI:16335 (3)
CHEBI:17509 (3)
CHEBI:18012 (3)
CHEBI:32816 (3)
CHEBI:30915 (3)
CHEBI:16919 (3)
CHEBI:15354 (3)
CHEBI:30769 (3)
CHEBI:18059 (2)
CHEBI:50967 (2)
CHEBI:28824 (2)
CHEBI:38118 (2)
CHEBI:28260 (2)
CHEBI:22470 (2)
CHEBI:30831 (2)
CHEBI:24266 (2)
CHEBI:59229 (1)
CHEBI:63533 (1)
CHEBI:17026 (1)
CHEBI:16469 (1)

Metabolite Name

Proline (5)
Gamma-Glutamylcysteine (3)
DCDP (3)
N-Methyl-D-aspartic acid (3)
Glycine (3)
Uridine (3)
UDP (3)
IMP (3)
ATP (3)
Methionine (3)
Valine (3)
CDP (3)
ADP (3)
Succinic acid (3)
UMP (3)
L-Histidine (3)
Asparagine (3)
Serine (3)
Alanine (3)
Threonine (3)
Phosphorylcholine (3)
L-Glutamine (3)
Glutamine (3)
Adenine (3)
Uric acid (3)
Cytidine (3)
Ethiofencarb (2)
Succinyl-CoA (2)
Acetoacetyl-CoA (2)
Propionyl-CoA (2)

First Public Date

2014 (206)
2024 (175)
2026 (167)
2023 (153)
2025 (136)
2022 (109)
2021 (108)
2020 (99)
2017 (88)
2018 (68)
2019 (66)
2015 (49)
2016 (34)
2013 (27)

Modelling Approach

Ordinary differential equation model (6)

Study status

Not yet recruiting (1)
Recruiting (1)
Completed (1)

Lab affiliation

CRUK Cambridge Institute University of Cambridge Li Ka Shing Centre Robinson Way CB2 0RE Cambridge United Kingdom (3)
1, Department of Biology, Institute of Molecular Systems Biology, ETH, Zurich, Switzerland 2, Faculty of Science, University of Zurich, Zurich, Switzerland (1)
1. Bioanalytical Mass Spectrometry Group, Max-Planck Institute for Multidisciplinary Sciencies, Am Fassberg 11, 37077 Goettingen, Germany; 2. Clinical Chemistry, University Medical Center Goettingen, Robert-Koch-Str. 40, 37075 Goettingen, Germany. (1)
Assistant professor, School of Biological Sciences, Seoul National University. (1)
Centre INRAE Val de Loire UMR physiologie de la Reproduction et des comportements (1)
Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Barcelona, Spain. Universitat Pompeu Fabra (UPF), Barcelona, Spain. (1)
Clinic of Reproductive Medicine, Vetsuisse Faculty, University of Zurich (1)
Clinic of Reproductive Medicine; Vetsuisse Faculty; University of Zurich (1)
Clinical Chemistry, Department of Translational Medicine, Lund University, Skane University Hospital Malmö, 205 02 Malmö, Sweden. (1)
College of Animal Science and Technology, Sichuan Agricultural University, Chengdu, P. R. 611130, China (1)
Department for Cell Biology BioMedizinisches Centrum - BMC LMU Muenchen, Med. Faculty Großhaderner Straße 9 82152 Planegg-Martinsried (1)
Department of Animal Sciences, Robert H. Smith Faculty of Agriculture, Food and Environment, the Hebrew University, Rehovot 76100, Israel Center of Excellence in Agriculture and Environmental Health, the Hebrew University, Rehovot 76100, Israel (1)
Department of Biochemistry and Cell Biology, Boston University Chobanian and Avedisian School of Medicine (1)
Department of Biology, Syracuse University, Syracuse, NY, USA (1)
Department of Cell and Molecular Biology, Karolinska Institutet, Stockholm, Sweden (1)
Department of Clinical Sciences, Cornell University, 930 Campus Rd, Ithaca, NY, 14853, USA (1)
Department of Dermatology Johns Hopkins School of Medicine (1)
Department of Molecular Endocrinology, National Institute for Research in Reproductive Health, Indian Council of Medical Research, Mumbai 400012, India (1)
Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, New York, NY 10029, and Center for Advanced Research on Diagnostic Assays, Icahn School of Medicine at Mount Sinai, New York, New York, NY 10029 (1)
Department of Pharmaceutical Sciences, School of Pharmacy, University of Maryland,Baltimore, MD 21201 (1)
Department of Pharmaceutical Sciences, University at Buffalo, US (1)
Department of Translational Medicine, Lund University (1)
Deputy head of department at Department of Translational Medicine. Lund University. Principal investigator at CEBMMS PI. Professor at Clinical Chemistry, Malmö Professor at Clinical Protein Science and Imaging Professor at Department of Clinical Sciences, Lund (1)
Head of the Laboratory of non-coding DNA, Institute of Cytology RAS, St. Petersburg, Russia (1)
IMBA - Institute of Molecular Biotechnology Dr. Bohrgasse 3 1030 Vienna Austria (1)
INRAE Val de Loire UMR Physiologie de la Reproduction et des Comportements (1)
INRAE Val de Loire UMR Physiologie de la reproduction et des comportements (1)
Inner Mongolia Key Laboratory Of Sheep & Goat Genetics Breeding and Reproduction, Hohhot,China. (1)
Institud National de la Recherche Agronomique (INRA), UMR7247 PRC, Nouzilly, France. (1)
Institute of Chemistry, Academia Sinica (1)

IsPrivate

False (6)

Model Flag

Non Kinetic (1)

Classification

viruses (1)

Study type

Transcription profiling by array (673)
RNA-seq of coding RNA (98)
ChIP-seq (43)
RNA-seq of non coding RNA (36)
Comparative genomic hybridization by array (20)
RNA-seq of coding RNA from single cells (19)
ChIP-chip by tiling array (16)
Methylation profiling by array (15)
Unknown experiment type (10)
Other (7)
Transcription profiling by SAGE (5)
ChIP-chip by array (5)
Genotyping by array (5)
Methylation profiling by high throughput sequencing (4)
Transcription profiling by tiling array (3)
MicroRNA profiling by array (3)
Animal - High-throughput sequencing (2)
DNA-seq (2)
RNA-seq of total RNA (2)
Observational (2)
Methyl-seq (1)
RNA-seq of non coding RNA from single cells (1)
Animal - One-color microarray (1)
Human - High-throughput sequencing (1)
Human - One-color microarray (1)
Transcription profiling by RT-PCR (1)
MicroRNA profiling by high throughput sequencing (1)
Spatial transcriptomics by high-throughput sequencing (1)
Proteomic profiling by array (1)
Interventional (1)

Release Date

2023 (644)
2022 (623)
2025 (595)
2021 (539)
2024 (533)
2020 (467)
2019 (341)
2015 (338)
2018 (296)
2014 (295)
2016 (290)
2017 (290)
2013 (267)
2011 (227)
2012 (215)
2010 (201)
2008 (139)
2009 (133)
2026 (93)
2007 (66)
2006 (36)
2005 (35)
2004 (11)
2000 (9)
2003 (8)
1999 (7)
2001 (5)
1998 (5)
2002 (4)
1997 (2)

Location

India (2)
Japan (1)

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Dynamics of the Transcriptome in the Primate Ovulatory Follicle

Experiments were designed to evaluate changes in the transcriptome (mRNA levels) in the ovulatory, luteinizing follicle of rhesus monkeys, using a controlled ovulation (COv) model that permits analysis of the naturally selected, dominant follicle at specific intervals (0, 12, 24, 36 hours) after exp...

ORGANISM(S): Macaca mulatta

2011-02-15 | E-GEOD-22776 | biostudies-arrayexpress

Expression profile of 16C ovarian follicle cells

We use DSN normalized RNA-seq to transcriptionally profile FACS sorted 16C ovarian follicle cells. These data provide insights into the developmental control of gene expression programmed gene amplificaton. Follicle cells were isolated from whole ovaries by trypsinization and filtering and stained w...

ORGANISM(S): Drosophila melanogaster

2011-05-27 | E-GEOD-29526 | biostudies-arrayexpress

Gene expression in bovine ovarian follicle theca interna

Thecal tissue forms a layer around the follicle just prior to antral stage and grows with the follicle (containing an oocyte) as it matures. The innermost component (theca interna) supplies hormones and other factors necessary to the growth and development of the granulosa and oocyte. Most follicles...

ORGANISM(S): Bos taurus

2014-05-20 | E-GEOD-49505 | biostudies-arrayexpress

RNA-seq profiling of theca and granulosa tissue of dominant follicle at 3 stages of follicular development in cows and heifers.

Cellular mechanisms that contribute to low estradiol concentrations produced by the preovulatory ovarian follicle in cattle with a compromised metabolic status (such as lactatino) are largely unknown. To gain insight into the main metabolic mechanisms affecting preovulatory follicle function RNAseq ...

ORGANISM(S): Bos taurus

2012-06-15 | E-GEOD-34317 | biostudies-arrayexpress

The transitional Gene Expression Profiling of Ovarian Follicle Treated with Indomethacin and RU486 in Rats

Indomethacin (an inhibitor of prostaglandin synthesis) and RU486 (mifepristone, progesterone receptor antagonist) are well known compounds which impair follicle rupture in rats, nevertheless the histopahotlogical figures of these follicle were different in detail due to the difference of the pathway...

ORGANISM(S): Rattus norvegicus

2014-02-01 | E-GEOD-54584 | biostudies-arrayexpress

Comparative gene expression analysis of dental follicle and periodontal ligament in humans

The aim of this study was to evaluate and compare the gene expression profiles of dental follicle and periodontal ligament in humans, which can possibly explain their functions of dental follicle and PDL such as eruption coordination and stress resorption. That may apply this information to clinical...

ORGANISM(S): Homo sapiens

2014-08-21 | E-GEOD-51342 | biostudies-arrayexpress

CGH Follicle OregonR-Orr-Weaver

modENCODE_submission_724 This submission comes from a modENCODE project of David MacAlpine. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: Most terminally differentiated Drosophila tissues are either polyploid or polytene. Unlike normal chromosomes, where the...

ORGANISM(S): Drosophila melanogaster

2010-05-15 | E-GEOD-17291 | biostudies-arrayexpress

CGH Follicle OregonR-mod

modENCODE_submission_723 This submission comes from a modENCODE project of David MacAlpine. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: Most terminally differentiated Drosophila tissues are either polyploid or polytene. Unlike normal chromosomes, where the...

ORGANISM(S): Drosophila melanogaster

2010-05-15 | E-GEOD-17290 | biostudies-arrayexpress

Neurotrophin NT3 promotes ovarian primordial to primary follicle transition

Neurotrophins are growth factors that are known to have a role in promoting cell survival and differentiation. The focus of the current study is to examine the role of neurotrophins in regulating ovarian primordial follicle development. Ovaries from 4-day old rats were placed into organ culture and ...

ORGANISM(S): Rattus norvegicus

2010-02-21 | E-GEOD-20358 | biostudies-arrayexpress

Inhibitory Actions of Anti-MM-CM-

The current study was designed to investigate the actions of Anti-MM-CM-

ORGANISM(S): Rattus norvegicus

2011-03-04 | E-GEOD-25629 | biostudies-arrayexpress

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