Fonseca S S - OmicsDI

Show results for

Unknown (1707)
Proteomics (77)
Transcriptomics (42)
Genomics (10)
Metabolomics (1)

Organisms

Acidithiobacillus ferrooxidans ATCC 53993 (45)
Aerococcus urinae NBRC 15544 = CCUG 36881 (45)
Allexis (45)
Arabidopsis thaliana (45)
Cyanophora paradoxa (45)
Ensifer adhaerens (45)
Enterococcus faecalis (45)
Globicatella sanguinis (45)
Helianthus annuus (45)
Histomonas meleagridis (45)
Leishmania major strain Friedlin (45)
Listeria monocytogenes (45)
Lotus japonicus (45)
Marchantia polymorpha (45)
Medicago truncatula (45)
Methylohalobius crimeensis 10Ki (45)
Mus musculus (45)
Mycobacterium tuberculosis (45)
Oryza sativa Indica Group (45)
Physcomitrium patens (45)
Pseudomonas putida KT2440 (45)
Homo sapiens (31)
Mus musculus (6)
Arabidopsis thaliana (5)
Pseudomonas putida (2)
Ovis aries (2)
Rattus norvegicus (2)
Pyrus communis (1)
Trypanosoma brucei brucei (1)
Oryza sativa (1)

Repository

biostudies-arrayexpress (50)
pride (45)
MassIVE (31)
EGA (1)
jPOST (1)
MetaboLights (1)
ENA (1)

Tissue

Cell culture (7)
B cell (4)
Plant cell (4)
Bone marrow (3)
Leaf (3)
Whole body (3)
Blood (2)
Early embryonic cell (2)
Epithelial cell (2)
Erythrocyte (2)
Natural killer cell (2)
Shoot (2)
Blood plasma (1)
Blood serum (1)
Brain (1)
Breast (1)
Cerebrospinal fluid (1)
Endothelial cell (1)
Epithelial cell of cervix (1)
Extracellular vesicle (1)
HUVEC cell (1)
HeLa cell (1)
Internode (1)
Kidney (1)
Liver (1)
Lung (1)
Macrophage (1)
Mantle (1)
Neutrophil (1)
Organism form (1)

Disease

Acute leukemia (4)
Malaria (3)
COVID-19 (2)
Cervix carcinoma (2)
Colon cancer (2)
Breast cancer (1)
Chronic kidney disease (1)
Lung carcinoma (1)
Lymphoma (1)
Multiple myeloma (1)
Neuroblastoma (1)
Plasmodium vivax malaria (1)

Technology Type

Mass Spectrometry (45)
Shotgun proteomics (32)
Affinity purification coupled with mass spectrometry proteomics (6)
Bottom-up proteomics (4)
Data-dependent acquisition (4)
HDMSE (3)
Gel-based experiment (2)
SWATH MS (2)
Top-down proteomics (2)
Mass spectrometry assay (1)
Data-independent acquisition (1)

Instrument Platform

GC-MS (9)
LTQ Orbitrap Velos (9)
GC MS (6)
Illumina NovaSeq 6000 (4)
NextSeq 500 (4)
Axon- GenePix4000B (3)
Illumina MiSeq (3)
Illumina HiSeq 2000 (3)
Illumina HiSeq 2500 (2)
LTQ Orbitrap (2)
NEBNext UltraTM RNA Library Prep Kit (1)
Trizol reagent (Invitrogen), Agilent 2100 Bioanalyzer (1)
MoFlo XDP (Beckman Coulter) or a FACSAria II (Becton Dickinson) (1)
Fluidigm C1 autoprep system (1)
BD Influx (1)
ScanArray Lite [PerkinElmer] (1)
GenePix 4000B [Axon Instruments] (1)
Ion Torrent Proton (1)
Illumina HiSeq 4000 (1)
Agilent 7890A GC with 5975C inert XL MSD (1)
LTQ XL (1)
Orbitrap Exploris 240 (1)
TripleTOF 6600 (1)
ZenoTOF 7600 (1)
Liquid Chromatography MS - positive - HILIC (1)

Publication Date

2016 (15)
2022 (13)
2025 (10)
2017 (9)
2024 (8)
2023 (8)
2020 (8)
2015 (7)
2021 (6)
2014 (5)
2011 (5)
2008 (5)
2018 (5)
2019 (5)
2012 (4)
2007 (4)
2013 (3)
2010 (3)
2026 (3)
2009 (1)

First Public Date

2020 (1)

Study type

Transcription profiling by array (20)
RNA-seq of coding RNA (7)
DNA-seq (6)
RNA-seq of coding RNA from single cells (4)
ChIP-chip by array (2)
Comparative genomic hybridization by array (2)
ChIP-seq (2)
Methylation profiling by array (2)
RNA-seq of total RNA (2)
Human - Single-cell sequencing (1)
Genotyping by array (1)
Transcription profiling by RT-PCR (1)

Release Date

2025 (229)
2022 (227)
2021 (206)
2023 (199)
2024 (197)
2020 (147)
2019 (99)
2018 (64)
2017 (62)
2015 (50)
2014 (50)
2016 (45)
2013 (32)
2012 (31)
2010 (30)
2011 (25)
2026 (24)
2009 (12)
2008 (12)
2007 (9)
2003 (3)
2006 (2)
2005 (1)
2002 (1)

Lab affiliation

Center of Molecular and Cellular Oncology, Yale University (4)
Professor Institutt for kreftforskning og molekylær medisin Erling Skjalgssons g 1, Laboratoriesenteret * 231.05.036 Trondheim 7030, Norway (3)
Centre for Functional Ecology, University of Coimbra (2)
Emory University (2)
Senior Postdoctoral Fellow, Huntington Laboratory, The Walter and Eliza Hall Institute, Australia (2)
(1) Department of Plant Biotechnology and Bioinformatics, Ghent University, B-9052 Ghent, Belgium; (2) VIB Center for Plant Systems Biology, B-9052 Ghent, Belgium. (1)
Associate professor II Department of Biology Faculty of Natural Sciences marianne.nymark@ntnu.no +4741528304 Realfagbygget, DU1-119, Gløshaugen, Høgskoleringen 5 Trondheim 7030 Norway (1)
Beatson Institute for Cancer Research - Glasgow MRC Toxicology Unit - University of Cambridge - Leicester (1)
CIIMAR - Interdisciplinary Centre of Marine and Environmental Research, Porto University (1)
CRG/UPF, Barcelona, Spain (1)
Center for Macroecology, Evolution and Climate, Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark. The Bioinformatics Centre, Department of Biology, University of Copenhagen, Copenhagen, Denmark. (1)
Departament of Biological Sciences, Laboratory of Enzimology and Proteomics, UFederal University of Ouro Preto, Brazil (1)
Departamento de Biología de Sistemas, Universidad de Alcalá, 28871 Alcala de Henares, Madrid, Spain (1)
Department of Biochemistry and Tissue Biology, Institute of Biology, University of Campinas (UNICAMP), Campinas, Brazil (1)
Department of Biotechnology, Norwegian University of Science and Technology, Norway. United Scientists CORE (Limited), Aotearoa - New Zealand. (1)
Department of Cancer Research and Molecular Medicine Faculty of Medicine Laboratory Centre, 5th floor. Erling Skjalgssons gt. 1 Norwegian University of Science and Technology NTNU 7006 Trondheim, Norway Tel: +47 72573076; Fax: +47 72576400 Cell. phone: +47 91825455 (1)
Department of Clinical and Experimental Medicine, Cell biology, Faculty of Health Science Linköping University, SE-581 83 Linköping, Sweden (1)
Department of Ecology, Environment and Evolution School of Life Sciences, La Trobe University, Bundoora Victoria, Australia (1)
Department of Genetics, "Luiz de Queiroz" College of Agricculture, University of São Paulo, Piracicaba, Brazil (1)
Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester MN (1)
Dept. of Biochemistry, Universidade Fereal do Rio Grande do Norte (1)
ESALQ (1)
GIMM – Gulbenkian Institute for Molecular Medicine (1)
Genetics Post-Graduation Program, Genetics Department, Federal University of Paraná, Curitiba, Brazil (1)
Ghent University, Department of Plant Biotechnology and Bioinformatics, 9052 Ghent, Belgium VIB Center for Plant Systems Biology, 9052 Ghent, Belgium Division of Plant and Crop Sciences, School of Biosciences, University of Nottingham, Loughborough LE12 5RD, United Kingdom. Centre for Plant Integrative Biology, University of Nottingham, Loughborough LE12 5RD, United Kingdom. (1)
Institute of Pharmacology and Structural Biology (IPBS), CNRS, Toulouse (1)
Maimónides Biomedical Research Institute of Córdoba (IMIBIC), Córdoba, Spain Cancer Network Biomedical Research Centre (CIBERONC), Madrid, Spain Medical Oncology Department, Reina Sofía University Hospital, Córdoba, Spain (1)
National Institute of Occupational Health, Pb 8149 Dep, N-0033, Oslo, Norway (1)
Norwegian University of Science and Technology (NTNU), Department of Biology, Functional Plant Biology Group, Norway (1)
Professor Biology, Dalhousie University (1)