Food technology

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Unknown (43488)
Genomics (1416)
Transcriptomics (323)
Proteomics (167)
Metabolomics (139)
Models (10)
Clinical (1)
Methylation profiling (1)
Other (1)

Organisms

Caenorhabditis elegans (216)
Mus musculus (113)
Rattus norvegicus (42)
Homo sapiens (29)
Sus scrofa (14)
Drosophila melanogaster (12)
Gallus gallus (8)
Apis mellifera (6)
Glycine max (6)
Triticum aestivum (6)
Escherichia coli (5)
cellular organisms (4)
Salmo salar (4)
Oncorhynchus mykiss (4)
Danio rerio (4)
Urocitellus parryii (3)
Rhodospirillum rubrum (3)
Sparus aurata (3)
Zea mays (3)
Solanum lycopersicum (3)
Arabidopsis thaliana (3)
Clostridium botulinum (2)
Salmonella enterica (2)
Streptococcus thermophilus (2)
Drosophila simulans (2)
Campylobacter jejuni (2)
Aedes aegypti (2)
Drosophila santomea (1)
Hoolock leuconedys (1)
Macrobrachium nipponense (1)

Organisms

food fermentation metagenome (89)
Mus musculus (43)
Homo sapiens (32)
food metagenome (27)
Rattus norvegicus (23)
Saccharomyces cerevisiae (19)
mouse gut metagenome (18)
Oryza sativa (14)
Escherichia coli (12)
unidentified (11)
Lacticaseibacillus paracasei (7)
human gut metagenome (7)
Gallus gallus (7)
food production metagenome (6)
Lactiplantibacillus plantarum (6)
Listeria monocytogenes (6)
Bos taurus (6)
Thrips tabaci (5)
anaerobic digester metagenome (5)
Sus scrofa (5)
Bacteria (5)
Lacticaseibacillus rhamnosus (4)
Cicer arietinum (4)
Enterococcus faecalis (4)
Aspergillus oryzae (4)
Klebsiella pneumoniae (4)
Staphylococcus aureus (4)
Bacillus velezensis (4)
Aspergillus oryzae 3.042 (3)
Aspergillus oryzae 100-8 (3)

Repository

ENA (1205)
biostudies-arrayexpress (501)
MetaboLights (135)
pride (123)
geo (32)
iProX (23)
BioModels (10)
MassIVE (8)
jPOST (5)
EVA (4)
PanoramaPublic (4)
EGA (3)
GNPS (2)
MetabolomicsWorkbench (2)
PAXDB (2)

Tissue

Cell culture (14)
Whole body (13)
Plant cell (9)
Seed (7)
Blood plasma (6)
Liver (5)
Milk (4)
Saliva (4)
Endosperm (3)
Epithelial cell (3)
Lung (3)
Plant (2)
Brain (2)
Colon (2)
Kidney (2)
Seedling (2)
Blood serum (1)
Bone marrow (1)
Caryopsis (1)
Cerebral cortex neuron (1)
Cerebrospinal fluid (1)
Egg (1)
Feces (1)
Germinated grain (1)
Hairy root culture (1)
Heart (1)
Hemolymph (1)
Hepatocyte (1)
Hypothalamus (1)
Intestinal juice (1)

Disease

Disease free (3)
Cancer (2)
Normal (2)
Colon cancer (2)
Toxicity (1)
IBDV infected (1)
N/a (1)
Carcinoma (1)
Atherosclerosis (1)
COVID-19 (1)
Chronic kidney disease (1)
Hemolytic-uremic syndrome (1)
Parkinson's disease (1)
Pneumonia (1)

Technology Type

Mass Spectrometry (125)
Mass spectrometry (96)
Shotgun proteomics (67)
Mass spectrometry assay (34)
Bottom-up proteomics (20)
Gel-based experiment (16)
Data-dependent acquisition (12)
Top-down proteomics (7)
NMR spectroscopy (6)
Data-independent acquisition (4)
ESI (2)
Affinity proteomics (2)
Affinity purification coupled with mass spectrometry proteomics (2)
All-ion fragmentation (2)
MSE (2)
Mass spectrometry imaging (2)
EI (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
DiaPASEF (1)
HDMSE (1)
Proteogenomics (1)
SRM/MRM (1)
SWATH MS (1)

Instrument Platform

Illumina NovaSeq 6000 (13)
Illumina HiSeq 2000 (12)
Illumina HiSeq 4000 (8)
Agilent High resolution C scanner (4)
NextSeq 2000 (4)
Illumina Genome Analyzer II (3)
Illumina NovaSeq X (3)
Illumina HiSeq 2500 (3)
Single-Cell Extraction: For enzymatic digestion, pronase (Septomyces argeus, 1 mg/mL) was applied for 25 minutes at room temperature for P0 to P8 datasets. Cells were dissociated and triturated into a single-cell suspension in ACSF supplemented with 1% fetal calf serum (FCS) and DNase (1 µL/10 mL). Trituration was performed using three glass Pasteur pipettes of decreasing diameters. For P30 datasets, enzymatic digestion and cell dissociation were carried out using the Worthington Papain Dissociation System, following the manufacturer’s instructions. Single-Nuclei Extraction: For nuclei isolation, the Hibernate™-E Medium was removed, and 500 µL of chilled 0.1X NP40 Lysis Buffer was added. Tissue was homogenized using a Pellet Pestle (15 strokes) and incubated on ice for 5 minutes. The suspension was pipette-mixed 10 times using a wide-bore pipette tip and incubated for an additional 10 minutes on ice. Following lysis, 500 µL of chilled wash buffer was added, and the mixture was pipette-mixed 5 times using a regular-bore pipette tip. The suspension was filtered through a 30 µm cell strainer into a 50 mL tube to remove debris. The filtered suspension was transferred to a 1.5 mL tube and centrifuged at 950 × g for 10 minutes at 4°C. The supernatant was carefully removed, and the nuclei pellet was retained for downstream analysis. (2)
Illumina HiScanSQ (2)
ScanArray Express HT [PerkinElmer] (2)
GenePix 4000B [Axon Instruments] (2)
Axon GenePix 4000B scanning hardware (2)
NA (2)
Digital Alliance of Canada (1)
AAV-CRISPR (1)
10X Dual Index Kit (1)
10X Chromium Next GEM Single-Cell 3' Kit v3.1 (1)
NaN (1)
10x Genomics Chromium controller; Agilent 2100 Bioanalyzer and Qubit fluorometer (Thermo Fisher) for QC (1)
10x Genomics Chromium controller (GEM generation on Chromium Next GEM Chip G) (1)
BD FACSAria cell sorter (viable-cell sorting); Countess III cell counter (Thermo Fisher; viability check) (1)
Chromium Next GEM Chip G (1)
10X v3 (1)
Dr. Tom Multi-omics Data Mining System (1)
Animal Experiment Facility (1)
SPF Animal Room (1)
PCR Thermocycler, Fragment Analyzer (1)
Centrifuge, Nucleic Acid Quantification Instrument (1)
Biosafety Cabinet, Liquid Nitrogen Tank, -80°C Freezer (1)

Publication Date

2013 (138)
2025 (71)
2011 (69)
2026 (65)
2012 (56)
2010 (51)
2022 (44)
2023 (42)
2014 (41)
2021 (40)
2015 (36)
2024 (34)
2016 (25)
2019 (24)
2008 (21)
2018 (20)
2020 (19)
2017 (16)
2009 (16)
2007 (14)
2006 (3)
2005 (2)
2004 (2)

UNIPROT ID/AC

1433S_HUMAN (2)
A0A087WXI2_HUMAN (2)
A0A096LPE2_HUMAN (2)
A1AG1_HUMAN (2)
A1AG2_HUMAN (2)
A1AT_HUMAN (2)
A1BG_HUMAN (2)
A2AP_HUMAN (2)
A2GL_HUMAN (2)
A2MG_HUMAN (2)
AACT_HUMAN (2)
ACTB_HUMAN (2)
ACTG_HUMAN (2)
ACTS_HUMAN (2)
ADIPO_HUMAN (2)
AFAM_HUMAN (2)
AGRG6_HUMAN (2)
ALBU_HUMAN (2)
ALS_HUMAN (2)
AMBP_HUMAN (2)
AMPN_HUMAN (2)
ANGT_HUMAN (2)
ANT3_HUMAN (2)
APMAP_HUMAN (2)
APOA1_HUMAN (2)
APOA2_HUMAN (2)
APOA4_HUMAN (2)
APOA_HUMAN (2)
APOB_HUMAN (2)
APOC1_HUMAN (2)

CHEBI ID

CHEBI:30769 (46)
CHEBI:6650 (39)
CHEBI:15741 (37)
CHEBI:16708 (33)
CHEBI:16335 (33)
CHEBI:17368 (33)
CHEBI:15756 (32)
CHEBI:7916 (31)
CHEBI:15428 (30)
CHEBI:16750 (30)
CHEBI:17822 (29)
CHEBI:28044 (29)
CHEBI:16865 (29)
CHEBI:27266 (29)
CHEBI:15891 (29)
CHEBI:16704 (29)
CHEBI:25094 (28)
CHEBI:17154 (28)
CHEBI:16196 (28)
CHEBI:17750 (28)
CHEBI:17596 (28)
CHEBI:17351 (28)
CHEBI:17234 (22)
CHEBI:28757 (15)
CHEBI:15366 (2)
CHEBI:30751 (2)
CHEBI:14575 (1)
CHEBI:23008 (1)
CHEBI:17158 (1)
CHEBI:32568 (1)

Metabolite Name

Taurine (37)
Adenine (36)
Guanosine (36)
Hypoxanthine (34)
L-Phenylalanine (31)
Uracil (30)
Inosine (29)
Creatinine (28)
L-Tyrosine (28)
L-Histidine (27)
Adenosine (27)
Uridine (27)
Ornithine (26)
L-Proline (25)
Citrulline (24)
Riboflavin (24)
Creatine (24)
Indole (23)
Choline (23)
Cytosine (23)
L-Glutamine (23)
Xanthine (22)
Betaine (21)
Thymine (21)
Citric acid (21)
Guanine (21)
L-Tryptophan (21)
L-Serine (21)
Cytidine (21)
Sucrose (21)

First Public Date

2026 (134)
2024 (134)
2023 (134)
2025 (129)
2021 (96)
2022 (95)
2019 (95)
2020 (93)
2014 (86)
2015 (54)
2017 (45)
2018 (44)
2013 (34)
2016 (30)
2012 (1)
2011 (1)

Modelling Approach

Ordinary differential equation model (5)
Constraint-based model (4)
Steady-state model (1)

Study status

Recruiting (1)

Lab affiliation

School of Food and Biological Engineering, Hefei University of Technology, Hefei, 230009, China (4)
Department of Bioactive and Functional Food Chemistry, Institute of Applied Biosciences, Karlsruhe Institute of Technology (KIT), Karlsruhe, Germany (3)
Department of Food Science and Technology, Biotechnical Faculty, University of Ljubljana, Ljubljana, Slovenia (3)
Competence Center of Food and Fermentation Technology (2)
Henan University of Technology (2)
School of Life Science, Gwangju Institute of Science and Technology, Cheomdangwagiro123, Buk-gu, Gwangju, 61005, Republic of Korea (2)
Shenzhen Key Laboratory of Plant Genetic Engineering and Molecular Design, Institute of Plant and Food Science, Department of Biology, School of Life Sciences, Southern University of Science and Technology, Shenzhen 518055, China (2)
Tanja Ćirković Velicković, PhD Professor of Biochemistry & Corresponding member of Serbian Academy of Sciences and Arts University of Belgrade-Faculty of Chemistry, Center of Excellence for Molecular Food Sciences and Department of Biochemistry, Studentski trg 12-16, 11 000 Belgrade, Serbia. Professor of Food Chemistry Department of Environmental Technology, Food Technology and Molecular Biotechnology, Ghent University Global Campus, Yeonsu-Gu, 21985 Incheon, Republic of Korea (2)
Technology and development department, Centro de Referencia para Lactobacillus (CERELA-CONICET), San Miguel de Tucumán, Tucumán, Argentina (2)
1. Graduate Institute of Biomedical Sciences, College of Medicine, Chang Gung University, Taoyuan 33302, Taiwan. 2. Molecular Medicine Research Center, Chang Gung University, Taoyuan 33302, Taiwan. 3. Department of Otolaryngology-Head and Neck Surgery, Chang Gung Memorial Hospital, Linkou 33305, Taiwan. 4. Research Center for Food and Cosmetic Safety, College of Human Ecology, Chang Gung University of Science and Technology, Taoyuan 33302, Taiwan. (1)
143 Food Industry Complex, Food Allergy Research and Resource Program, Department of Food Science and Technology, University of Nebraska-Lincoln , Lincoln, Nebraska 68583-0919, United States (1)
1Department of Food Characterization, Quality and Safety, Institute of Food Science, Technology and Nutrition (ICTAN-CSIC), Madrid, Spain (1)
1Division of Radiation Health, 2Department of Pharmaceutical Sciences, 3Neurobiology & Developmental Sciences, (1)
Assistant Professor Department of Food Science & Technology Food Allergy Research & Resource Program University of Nebraska-Lincoln (1)
Assistant Professor, Department of Food Science and Technology, Texas A&M University, College Station, TX 77843, USA (1)
Associate Professor, Institute of Advanced Study in Science and Technology (IASST), Guwahati-110035, Assam, India (1)
Beijing Advance Innovation Center for Food Nutrition and Human Health, Beijing Laboratory of Food Quality and Safety, Beijing Engineering and Technology Research Center of Food Additives, Beijing Technology and Business University (BTBU), Beijing 100048, China (1)
Beijing Key Lab of Bioprocess, National Energy R&D Center for Biorefinery, College of Life Science and Technology, Beijing University of Chemical Technology, Beijing 100029, PR China (1)
Bioprocessing Technology Institute (BTI), Agency for Science, Technology and Research (A*STAR), 138668, Singapore. (1)
CERELA CONICET - Argentina (Reference Center for Lactobacilli, National Scientific and Technical Research Council - Argentina) (1)
Center for Microbial Ecology and Technology (CMET), Faculty of Bioscience Engineering Ghent University, Coupure Links 653, 9000 Ghent, Belgium, Center for Advanced Process Technology for Urban Resource recovery (CAPTURE), Frieda Saeysstraat 1, 9052 Ghent, Belgium (1)
Center for Synthetic Microbiology (SYNMIKRO) & Faculty of Chemistry, Philipps-University Marburg, 35043 Marburg, Germany (1)
City University of New York Advanced Science Research Center - Nanoscience Department, USA City University of New York Hunter College -Chemistry & Biochemistry Department, USA (1)
College of Biological Engineering, Henan University of Technology, Zhengzhou, China (1)
College of Biological Engineering, Henan University of Technology, Zhengzhou, PR China (1)
College of Food Science & Technology, Nanjing Agricultural University, Weigang 1#, Nanjing, 210095, P.R. China (1)
College of Food Science and Technology, Nanjing Agricultural University, Nanjing, China (1)
College of Food Science and Technology, Northwest University, China (1)
College of Life Science & Technology Beijing University of Chemical Technology Beijing, 10029, China (1)
College of Life Science and Technology, Xinjiang University, Urumqi, China (1)

IsPrivate

False (10)

Model Flag

Non Kinetic (2)

Submitter Keywords

Manuscript Accepted (1)
FROG (1)

Classification

bacteria (75)
fungi (20)
viruses (3)
helminths (1)
protozoa (1)

Modification

Not available (1)

Study type

ChIP-seq (197)
Transcription profiling by array (170)
RNA-seq of coding RNA (40)
RNA-seq of coding RNA from single cells (28)
Transcription profiling by tiling array (14)
RNA-seq of non coding RNA (13)
Comparative genomic hybridization by array (7)
Unknown experiment type (6)
Animal - One-color microarray (6)
MicroRNA profiling by array (2)
Methylation profiling by array (2)
Methylation profiling by high throughput sequencing (2)
RNA-seq of total RNA (2)
Baseline (1)
High-throughput sequencing (1)
RNAi profiling by array (1)
ChIP-chip by array (1)
Antigen profiling (1)
MicroRNA profiling by high throughput sequencing (1)
Spatial transcriptomics by high-throughput sequencing (1)
DNA-seq (1)
Proteomic profiling by array (1)
Genotyping by high throughput sequencing (1)
Observational (1)

Release Date

2022 (6363)
2025 (5970)
2023 (5846)
2024 (5007)
2021 (4889)
2020 (3665)
2019 (2770)
2018 (2230)
2017 (1472)
2016 (1221)
2015 (927)
2026 (915)
2014 (700)
2013 (523)
2012 (379)
2011 (290)
2010 (245)
2009 (160)
2008 (121)
2007 (82)
2006 (51)
2005 (36)
2004 (28)
2003 (21)
2002 (19)
2001 (18)
2000 (18)
1999 (14)
1998 (9)

Location

France (1)

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Composition of raw plant-based food items

Not available

ORGANISM(S): Malus domestica/Musa acuminata/Solanum lycopersicum/Lactuca sativa/Fragaria x ananassa/Daucus carota/Prunus persica/Allium cepa/Spinacia oleracea/Capsicum annuum/Zea mays/Allium sativum/Ocimum basilicum/Solanum tuberosum/Glycine max/Phaseolus vulgaris/Olea europaea/Cicer arietinum/Beta vulgaris/Pyrus communis

ST002492 | MetabolomicsWorkbench

Composition of raw plant-based food items Pilot Study

Not available

ORGANISM(S): Malus domestica/Solanum lycopersicum/Lactuca sativa/Fragaria x ananassa/Allium sativum/Ocimum basilicum

ST002493 | MetabolomicsWorkbench

Induction of Interleukin-9-producing Mucosal Mast cells Promotes Susceptibility to IgE-mediated Experimental Food Allergy

Experimental IgE-mediated food allergy depends on intestinal anaphylaxis driven by interleukin (IL)-9. However, the primary cellular source of IL-9 and the mechanisms underlying the susceptibility to food-induced intestinal anaphylaxis remain unclear. Herein, we have reported the identification of m...

ORGANISM(S): Mus musculus

2015-09-11 | E-GEOD-72921 | biostudies-arrayexpress

Multi-omics Characterization of NIST Seafood Reference Materials

The National Institute of Standards and Technology (NIST) has prepared four seafood reference materials (RMs) for use in food safety and nutrition studies: wild-caught and aquacultured salmon (RM 8256 and RM 8257) and wild-caught and aquacultured shrimp (RM 8258 and RM 8259). These materials were ch...

ORGANISM(S): Oncorhynchus Kisutch (ncbitaxon:8019) Penaeoidea (ncbitaxon:111520)

2023-08-21 | MSV000092716 | MassIVE

food metagenome

food metagenomic Raw sequence reads

PRJNA388744 | ENA

food metagenome

Propidium monoazide-metagenomic analysis by 16S rRNA gene based sequencing with chilled food.

PRJDB5378 | ENA

Advances in Atmospheric Cold Plasma Technology for Plant-Based Food Safety, Functionality, and Quality Implications.

Not available

S-EPMC12428716 | biostudies-literature

A proteomics approach reveals metabolic responses to food intake in anadromous Coilia nasus