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TranscriptomicsTranscription profiling of Salmonella enterica serovar Typhimurium definitive phage type 104 (DT104) isolates
Salmonella enterica serovar Typhimurium (S. Typhimurium) definitive phage type 104 (DT104) has caused significant morbidity and mortality in humans and animals for almost three decades. We have completed the full DNA sequence of one DT104 strain, NCTC13348 and show that the main differences between ...
ORGANISM(S): Salmonella enterica 
2008-09-05 | E-MTAB-20 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Salmonella enterica (I) serovar Typhi Ty2 wild type and ompR null strains in a strand-specific manner
Analysis of transcriptome in a strand-specific manner to further refine previous genome annotation; RNA-seq was also combined with microarray and proteome analysis to further define the S. Typhi ompR regulon and identify novel ompR regulated transcripts.
ORGANISM(S): Salmonella enterica 
2009-03-03 | E-TABM-644 | biostudies-arrayexpress
TranscriptomicsSalmonella bongori comparative genome hybridization
Comparative genome hybridization (CGH) of 35 Salmonella bongori strains and 16 Salmonella spp strains belonging to SarC collection
ORGANISM(S): Salmonella enterica 
2010-12-31 | E-TABM-931 | biostudies-arrayexpress
TranscriptomicsComparative genomic hybridization of strains of Salmonella enterica serovar Enteritidis from Uruguay, other distant geographical regions and other serovars isolated in Uruguay
Microarray based CGH was conducted over a group of 29 strains of S. Enteritidis spanning different epidemiological periods in Uruguay, plus 6 other S. Enteritidis strains isolated from distant geographical regions. We also included 9 Salmonella enterica strains of other serovars isolated in Uruguay....
ORGANISM(S): Salmonella enterica 
2009-03-03 | E-TABM-603 | biostudies-arrayexpress
TranscriptomicsComparative genomic hybridization of forty clinical isolates from twelve common serovars within Salmonella enterica subspecies I (sspI) to identify the conserved gene pool present
We have performed microarray hybridization studies on forty clinical isolates from twelve common serovars within Salmonella enterica subspecies I (sspI) to identify the conserved gene pool present.
ORGANISM(S): Salmonella enterica subspecies I 
2005-12-06 | E-SGRP-1 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Salmonella enterica serotype SL1344 wildtype, pSf-R27sfh and pSf-R27 at stationary and exponential growth phases, to investigate the role of the Sfh protein encoded by transmissible plasmids and involved in human typhoid
The Sfh protein is encoded by self-transmissible plasmids involved in human typhoid and is closely related to the global regulator H-NS. We have found that Sfh provides a stealth function that allows the plasmids to be transmitted to new bacterial hosts with minimal effects on their fitness. Introdu...
ORGANISM(S): Salmonella enterica serotype Typhimurium 
2007-01-15 | E-SGRP-7 | biostudies-arrayexpress
TranscriptomicsTranscription profiling by array of Salmonella typhimurium SL1344 derived multidrug resistant mutant
Transcriptome of a ciprofloxacin selected multidrug resistant mutant derived from Salmonella Typhimurium SL1344
ORGANISM(S): Salmonella typhimurium 
2010-12-04 | E-MEXP-2696 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of 61 Salmonella enterica serovar Typhimurium isoltates to identify hotspots in genome variation and distinguish between different isolates from the same geographical region
A collection of 61 Salmonella enterica serovar Typhimurium (S. Typhimurium) of animal and human origin, matched as closely as possible by phage type, antimicrobial resistance pattern and place / time of isolation, and sourced from farms or hospitals in Scotland, were analysed by antimicrobial suscep...
ORGANISM(S): Salmonella enterica serotype Typhimurium 
2007-06-09 | E-SGRP-6 | biostudies-arrayexpress
TranscriptomicsComparative genomic hybridization of twenty four Salmonella enteritidis strains from six phage types
In this study differences at the genetic level of 24 S. Enteritidis strains from six phage types were compared using Comparative Genomic Hybridisation (CGH) DNA microarrays to determine why some certain phage types are 'less successful' in causing human infection.
ORGANISM(S): Salmonella typhimurium 
2008-08-02 | E-MEXP-1720 | biostudies-arrayexpress
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