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TranscriptomicsRNAseq Analysis of Formalin-Fixed Paraffin-Embedded Prostate Cancer Tissues
In an effort to identify biomarkers of recurrence, we have performed global RNA-sequencing on 106 formalin-fixed, paraffin-embedded (FFPE) prostatectomy samples from 100 patients at three independent sites, and identified a new set of biomarkers of biochemical recurrence composed of a 24-gene panel....
ORGANISM(S): Homo sapiens 
2014-04-11 | E-GEOD-54460 | biostudies-arrayexpress
ProteomicsIdentification of HER2 peptides for quantification in formalin-fixed paraffin-embedded breast cancer tissues
The ability to accurately quantify proteins in formalin-fixed paraffin-embedded (FFPE) tissues using targeted mass spectrometry opens exciting perspectives for biomarker discovery. We have developed and evaluated a selected reaction monitoring (SRM) assay for the human receptor tyrosine-protein kina...
ORGANISM(S): Homo sapiens (Human) 
2015-07-16 | PXD002281 | Pride
Breast cancer Human receptor tyrosine-protein kinase erbb-2 (her2) Human Ltq orbitrap velos Formalin-fixed parrafin-embedded tissues (ffpe) 
TranscriptomicsIllumina HT-12 expression array data for Diffuse Intrinsic Pontine Glioma
Diffuse Intrinsic Pontine Glioma (DIPG) is a fatal brain cancer that arises in the brainstem of children with no effective treatment and near 100% fatality. The failure of most therapies can be attributed to the delicate location of these tumors and choosing therapies based on assumptions that DIPGs...
ORGANISM(S): Homo sapiens 
2014-03-31 | E-GEOD-50021 | biostudies-arrayexpress
TranscriptomicsExpression profiling of lower-grade diffuse astrocytic glioma
Diffuse gliomas represent the most prevalent class of primary brain tumor. Despite significant recent advances in the understanding of glioblastoma (WHO IV), its most malignant subtype, lower-grade (WHO II and III) glioma variants remain comparatively understudied, especially in light of their nota...
ORGANISM(S): Homo sapiens 
2012-02-24 | E-GEOD-35158 | biostudies-arrayexpress
TranscriptomicsDiffuse Intrinsic Pontine Glioma
This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
ORGANISM(S): Homo sapiens 
2014-03-31 | E-GEOD-50025 | biostudies-arrayexpress
TranscriptomicsmiRNA expression profiling of primary melanoma tumors (cohort I)
We performed global microRNA expression profiling of a cohort of primary melanoma patient samples linked to a well-annotated clinical database. The goal of this study was to identify microRNA that are associated to or correlated with various clinical parameters and patient outcomes. Candidate microR...
ORGANISM(S): Homo sapiens 
2015-02-01 | E-GEOD-62370 | biostudies-arrayexpress
TranscriptomicsmiRNA expression profiling of primary melanoma tumors (cohort II)
We performed global microRNA expression profiling of a cohort of primary melanoma patient samples linked to a well-annotated clinical database. The goal of this study was to identify microRNA that are associated to or correlated with various clinical parameters and patient outcomes. Candidate microR...
ORGANISM(S): Homo sapiens 
2015-02-01 | E-GEOD-62371 | biostudies-arrayexpress
TranscriptomicsmiRNA expression profiling of primary melanoma tumors
This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
ORGANISM(S): Homo sapiens 
2015-02-01 | E-GEOD-62372 | biostudies-arrayexpress
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