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TranscriptomicsRNA-Seq of Collaborative Cross Mouse Founder Strains
RNA-Seq was performed on all 8 mouse founder strains of the Collaborative Cross to obtain a comprehensive splicing landscape of each strain.
ORGANISM(S): Mus musculus 
2014-12-04 | E-MTAB-5020 | biostudies-arrayexpress
GenomicsMus musculus strain:CC Founder Strains
RNA-Seq of Collaborative Cross Mouse Founder Strains
PRJNA228935 | ENA
TranscriptomicsRNA-Seq based characterization of long non-coding RNA involved in respiratory viruses pathogenesis
We aimed at systematically inferring the regulatory functions of host lncRNAs in response to influenza A virus (IAV) and severe acute respiratory syndrome coronavirus (SARS-CoV) in the mouse model, using a ‘guilt-by-association’ approach which relies on finding which lncRNAs have similar expression ...
ORGANISM(S): Mus musculus 
2014-05-05 | E-GEOD-52405 | biostudies-arrayexpress
GenomicsFounder mice islet RNA profiling
Founder mice islet RNA profiling
PRJNA747994 | ENA
ProteomicsDefining the effects of genetic variation on a proteome-wide scale
Genetic variation governs protein expression through both transcriptional and post-transcriptional processes. To investigate this relationship, we combined a multiplexed, mass spectrometry-based method for protein quantification with an emerging mouse model harboring extensive genetic variation fro...
ORGANISM(S): Mus musculus (Mouse) 
2016-06-15 | PXD002801 | Pride
Tmt Proteomics Quantitative Quantitative trait loci 
GenomicsNephrotoxicity modelled ex vivo in the founder strains of the BXD mouse consortium
Nephrotoxicity modelled ex vivo in the founder strains of the BXD mouse consortium
PRJNA1476607 | ENA
GenomicsGenome-wide chromatin accessibility of founder mice pancreatic islets
Genome-wide chromatin accessibility of founder mice pancreatic islets
PRJNA747993 | ENA
TranscriptomicsBrain Gene Expression Differences Related to Ethanol Preference in the Collaborative Cross Founder Strains
The collaborative cross (CC) founder strains include five classical inbred laboratory strains (129S1/SvlmJ, A/J, C57BL/6J (B6), NOD/ShiLtJ, and NZO/HILtJ) and three wild-derived strains (CAST/EiJ, PWK/PhJ (PWK) and WSB/EiJ) The strains encompass 89% of the genetic diversity available in Mus musculus...
ORGANISM(S): Mus musculus 
2022-08-27 | GSE212000 | GEO
GenomicsBrain Gene Expression Differences Related to Ethanol Preference in the Collaborative Cross Founder Strains
Brain Gene Expression Differences Related to Ethanol Preference in the Collaborative Cross Founder Strains
PRJNA873132 | ENA
UnknownSplicing landscape of the eight collaborative cross founder strains.
Not available
S-EPMC4320832 | biostudies-literature
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