Fox - OmicsDI

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Unknown (13488)
Transcriptomics (777)
Genomics (742)
Proteomics (95)
Metabolomics (16)
Other (11)
Models (4)
Genomic (4)
Methylation profiling (3)
Multiomics (1)

Organisms

Homo sapiens (395)
Mus musculus (332)
Drosophila melanogaster (37)
Arabidopsis thaliana (29)
Caenorhabditis elegans (23)
Saccharomyces cerevisiae (19)
Glycine max (15)
Rattus norvegicus (14)
Danio rerio (12)
Medicago truncatula (9)
Streptomyces venezuelae (9)
Macaca mulatta (7)
Schizosaccharomyces pombe (5)
Oryza sativa (5)
Canis lupus familiaris (4)
Larinioides sclopetarius (4)
Anopheles gambiae (4)
Sus scrofa (4)
Papio anubis (3)
Spodoptera frugiperda (3)
Lolium perenne (3)
Zea mays (3)
Staphylococcus aureus (3)
Hordeum vulgare (3)
Solanum lycopersicum (3)
Oryza sativa Japonica Group (3)
Escherichia coli (3)
Candida albicans (3)
Drosophila willistoni (2)
Amphimedon queenslandica (2)

Organisms

Mus musculus (106)
Homo sapiens (102)
root metagenome (36)
Vulpes vulpes (16)
Vulpes lagopus (8)
Drosophila melanogaster (6)
Saccharomyces cerevisiae (6)
Pteropus alecto (4)
Macrothylacia rubi (4)
Rattus norvegicus (4)
Pteropus rufus (3)
Passerella iliaca (3)
Arabidopsis thaliana (3)
Metallosphaera sedula (2)
Urocyon cinereoargenteus (2)
Thamnobryum alopecurum (2)
Pteropus pselaphon (2)
Fusarium oxysporum (2)
gut metagenome (2)
Pseudomonas aeruginosa (2)
feces metagenome (2)
Danio rerio (2)
Escherichia coli 4541-1 (1)
Cryptosporidium canis (1)
Zoysia mosaic virus (1)
Leptospira interrogans serovar Pomona str. Fox 32256 (1)
Urocyon (1)
Vulpes (1)
Lycalopex culpaeus (1)
Mycoplasma sp. CB698 (1)

Repository

biostudies-arrayexpress (883)
ENA (485)
geo (114)
pride (78)
EGA (49)
MetaboLights (11)
MassIVE (9)
jPOST (5)
dbGaP (4)
GNPS (4)
BioModels (3)
EVA (2)
iProX (2)
MetabolomicsWorkbench (1)
PanoramaPublic (1)
PMR (1)

Tissue

Cell culture (21)
Brain (5)
Epithelial cell (5)
Endosperm (4)
Skin (4)
Liver (3)
Blood (2)
Colon (2)
Dentin (2)
Fibroblast (2)
Heart (2)
Hepatocyte (2)
Peripheral blood mononuclear cell (2)
Tooth (2)
Tooth enamel (2)
Breast cancer cells (1)
Antler (1)
B cell (1)
Blood plasma (1)
Blood serum (1)
Bone (1)
Cell suspension culture (1)
Colostrum (1)
Endometrial cancer cell line (1)
Gastrointestinal stromal tumor cell (1)
HEK-293T cell (1)
Hair (1)
Hair shaft (1)
HeLa cell (1)
Kidney (1)

Disease

Malignant neoplasm of ovary (5)
Breast cancer (4)
Colon cancer (4)
Parkinson's disease (3)
Osteosarcoma (2)
Normal (2)
Disease free (2)
HIV encephalitis (1)
Moderate (1)
Melanoma (1)
Cancer (1)
(-)ssRNA virus infectious disease (1)
COVID-19 (1)
Cancer (1)
Endometrial cancer (1)
Glioblastoma (1)
Human immunodeficiency virus infectious disease (1)
Inflammatory bowel disease (1)
Male infertility (1)
Oral squamous cell carcinoma (1)
Prostate adenocarcinoma (1)
Severe acute respiratory syndrome (1)

Technology Type

Mass Spectrometry (79)
Shotgun proteomics (44)
Bottom-up proteomics (13)
Affinity purification coupled with mass spectrometry proteomics (10)
Mass spectrometry (8)
SWATH MS (6)
Top-down proteomics (6)
Data-dependent acquisition (5)
Gel-based experiment (4)
SRM/MRM (3)
Mass spectrometry assay (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Data-independent acquisition (2)
Immunopeptidomics (2)
NMR spectroscopy (1)
ESI (1)
Glycoproteomics (1)

Instrument Platform

Illumina HiSeq 2000 (45)
Illumina HiSeq 2500 (43)
Illumina NovaSeq 6000 (36)
NextSeq 500 (16)
Illumina HiSeq 4000 (11)
NextSeq 2000 (9)
Illumina Genome Analyzer II (5)
NA (3)
NextSeq 550 (3)
Bioanalyzer 2200 (2)
Chromium Controller (2)
Illumina MiSeq (2)
Illumina HiSeq 3000 (2)
UC Irvine HPC (1)
Bioanalyzer, Nanodrop, (1)
NaN (1)
10x Genomics Chromium controller; Agilent 2100 Bioanalyzer and Qubit fluorometer (Thermo Fisher) for QC (1)
10x Genomics Chromium controller (GEM generation on Chromium Next GEM Chip G) (1)
BD FACSAria cell sorter (viable-cell sorting); Countess III cell counter (Thermo Fisher; viability check) (1)
Illumina-compatible library preparation equipment (1)
Monarch RNA purification column system (1)
Standard mammalian cell culture equipment (1)
Thermal cycler; magnetic separation rack; Qubit Fluorometer; Agilent TapeStation 4200 (1)
Microcentrifuge; magnetic separation rack; Qubit Flu/spectrophotometer; Agilent TapeStation 4200 (1)
Incubator shaker; spectrophotometer; Cmag measurement system; flow cytometer (1)
Element AVITI (1)
PureLink RNA Mini Kit (1)
Illumina TruSeq (1)
HiSeq 1500 (1)
ScanArray 4000 [PerkinElmer] (1)

Publication Date

2015 (165)
2014 (148)
2013 (120)
2016 (107)
2012 (73)
2010 (63)
2022 (50)
2011 (50)
2025 (37)
2026 (36)
2024 (36)
2023 (35)
2021 (32)
2020 (31)
2018 (28)
2008 (27)
2019 (21)
2009 (20)
2017 (19)
2005 (5)
2007 (5)
2004 (1)

UNIPROT ID/AC

Q21217 (1)
Q0PDK5 (1)
F5GU77 (1)
O02092 (1)
Q8MXT1 (1)
B6VQ90 (1)
B0M0N9 (1)
H2L2H2 (1)
B0M0P0 (1)
H2L2H3 (1)
Q19013 (1)
Q93650 (1)
P30645 (1)
Q27483 (1)
Q22797 (1)
P54002 (1)
Q23323 (1)
G8JY39 (1)
Q22949 (1)
O17731 (1)
Q22100 (1)
Q9XUY5 (1)
Q21625 (1)
G8JYF6 (1)
Q9N2V9 (1)
A0FLQ6 (1)
Q22494 (1)
P91266 (1)
Q10578 (1)
Q9N5A0 (1)

CHEBI ID

CHEBI:30769 (4)
CHEBI:70744 (3)
CHEBI:29016 (3)
CHEBI:30915 (3)
CHEBI:16919 (3)
CHEBI:15354 (3)
CHEBI:16643 (3)
CHEBI:17368 (3)
CHEBI:16776 (2)
CHEBI:10093 (2)
CHEBI:28462 (2)
CHEBI:45744 (2)
CHEBI:45441 (2)
CHEBI:17768 (2)
CHEBI:70979 (2)
CHEBI:46905 (2)
CHEBI:27838 (2)
CHEBI:27410 (2)
CHEBI:32980 (2)
CHEBI:15901 (2)
CHEBI:73134 (2)
CHEBI:26271 (2)
CHEBI:25094 (2)
CHEBI:16856 (2)
CHEBI:16040 (2)
CHEBI:18186 (2)
CHEBI:16708 (2)
CHEBI:15956 (2)
CHEBI:16742 (2)
CHEBI:73858 (2)

Metabolite Name

Tabersonine (2)
3-Hydroxymandelic acid (2)
Phenol (2)
Caffeate (2)
Leucine (2)
Chenodeoxycholic acid (2)
Taurodeoxycholic acid (2)
Arginine (2)
Valine (2)
Yohimbine (2)
Glutathione (2)
Ajmaline (2)
LPC 18:3 (2)
Taurocholic acid (2)
LPC 18:1 (2)
Deoxycholic acid (2)
Voacamine (2)
Formononetin (2)
Thymidine (2)
Tryptophan (2)
Wieland-Gumlich aldehyde (1)
Voachalotine (1)
Voacangine (1)
Vincamajine (1)
Tubotaiwine (1)
Tabernanthine (1)
Tabernaemontanine (1)
Strychnogucine C (1)
Strychnogucine A (1)
Retuline (1)

First Public Date

2014 (66)
2018 (61)
2024 (53)
2026 (49)
2025 (40)
2023 (40)
2020 (35)
2022 (31)
2021 (31)
2017 (20)
2019 (17)
2016 (16)
2015 (14)
2013 (12)

Modelling Approach

Ordinary differential equation model (2)
Other (1)

Lab affiliation

Cancer Biology Department, Fox Chase Cancer Center, Philadelphia, PA, USA (4)
School of Chemistry and Molecular Biosciences, The University of Queensland, Australia (4)
University of Mississippi (3)
Department of Neurological Sciences, University of Nebraska Medical Center, Omaha NE (2)
University of Nebraska Medical Center (2)
1.Department of Medical Oncology, Inselspital, Bern University Hospital, University of Bern, 3010 Bern, Switzerland. 2.Department for BioMedical Research, University of Bern, 3008 Bern, Switzerland. 3. Conway Institute for Biomolecular and Biomedical Research, University College Dublin, Dublin D04 V1W8, Ireland. (1)
Academia Sinica Institute of Biological Chemistry(IBC), Dr. Shih-Hsiung Wu's lab, Taipei, Taiwan (R.O.C.) (1)
Assistant Professor Department of Medicine, Division of Endocrinology, Metabolism, and Nutrition Department of Pharmacology and Cancer Biology Duke University Medical Center (1)
Associate Professor Microbiology and Immunology Department Upstate Medical University Weiskotten Hall Rm. 2273 766 Irving Avenue Syracuse, NY 13210 Tel 315.464.5870 (1)
Associate Professor; Director of the Molecular and Applied Sciences Laboratory and Applied Physiology Laboratory (1)
Associate professor, department of Biology. University of Rochester,NY, USA University of Rochester Mass Spectrometry Resource Laboratory, NY, USA ( lab head ) (1)
Avaxia Biologics, Inc. (1)
BioArCh, University of York, United Kingdom (1)
Bioengineering (1)
Brazilian Biosciences National Laboratory (LNBio), Brazilian Center for Research in Energy and Materials (CNPEM), Campinas, Sao Paulo, Brazil. (1)
Cambridge Centre for Proteomics, Department of Biochemistry, University of Cambridge, UK (1)
Cancer Biology Program, Fox Chase Cancer Center, Philadelphia, PA, USA (1)
Cancer Biology, Fox Chase Cancer Center, Philadelphia, Pennsylvania, United States (1)
Cancer Signaling & Microenvironment Program, Fox Chase Cancer Center, Philadelphia, Pennsylvania, United States (1)
Cancer Signaling and Epigenetics Program, Fox Chase Cancer Center, Phialdelphia, PA, USA (1)
Cancer Signaling and Epigenetics Program, Fox Chase Cancer Center, Philadelphia, Pennsylvania, United States (1)
Cancer Signaling and Microenvironment Program,Fox Chase Cancer Center, Philadelphia, PA, USA (1)
DAI Medicina di Laboratorio e Trasfusionale, ‘Federico II’University of Naples, 80131 Naples, Italy (1)
Department of BioMOlecular Sciences University of Mississippi (1)
Department of Biochemistry and Molecular Biology, Hatters Lab, University of Melbourne, Australia (1)
Department of Biochemistry, Emory School of Medicine, Atlanta, Georgia, USA (1)
Department of Biology, University of Copenhagen, Denmark. (1)
Department of Biomedical and Clinical Sciences (BKV), Linköping University, Linköping, Sweden; Wallenberg Centre for Molecular Medicine (WCMM), Linköping University, Linköping, Sweden. (1)
Department of Biotechnology, Delft University of Technology, The Netherlands. (1)
Department of Cardiovascular and Metabolic Sciences, Lerner Research Institute, Cleveland Clinic Foundation, Cleveland, OH 44195, USA (1)

IsPrivate

False (3)

Model Flag

Non Kinetic (1)

Classification

bacteria (6)
fungi (2)
viruses (1)
protozoa (1)

Modification

4x(15)N labeled L-arginine (1)

Study type

RNA-seq of coding RNA (347)
Transcription profiling by array (192)
ChIP-seq (138)
RNA-seq of non coding RNA (48)
Methylation profiling by high throughput sequencing (34)
Transcription profiling by tiling array (17)
Other (12)
RNA-seq of coding RNA from single cells (12)
RNA-seq of total RNA (12)
Methylation profiling by array (9)
Cell line - High-throughput sequencing (7)
Unknown experiment type (6)
ChIP-chip by tiling array (6)
DNA-seq (5)
Comparative genomic hybridization by array (4)
Single nucleus RNA sequencing (4)
High-throughput sequencing (3)
Animal - High-throughput sequencing (3)
Genotyping by array (3)
ATAC-seq (3)
Human - High-throughput sequencing (2)
ChIP-chip by array (2)
MicroRNA profiling by high throughput sequencing (2)
Ribo-seq (2)
MicroRNA profiling by array (2)
Genotyping by high throughput sequencing (2)
MNase-seq (1)
Plant - High-throughput sequencing (1)
Spatial transcriptomics by high-throughput sequencing (1)
Bisulfite-seq (1)

Release Date

2022 (1316)
2021 (1272)
2023 (1204)
2025 (1139)
2024 (1106)
2020 (1106)
2019 (923)
2018 (852)
2015 (774)
2016 (767)
2017 (742)
2014 (649)
2013 (507)
2012 (394)
2011 (348)
2010 (307)
2009 (210)
2026 (171)
2008 (170)
2007 (98)
2005 (73)
2006 (65)
2003 (47)
2004 (29)
2000 (25)
2001 (19)
1999 (18)
1998 (17)
2002 (13)
1997 (5)

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Transcription profiling of silver fox brain selected for tame behavior vs non-selected silver fox

Comparison of brain gene expression between silver foxes selected for tame behavior and non-selected silver fox.

ORGANISM(S): Vulpes vulpes

2005-12-31 | E-MEXP-451 | biostudies-arrayexpress

FOX transcription factors are common regulators of Wnt/β-catenin signaling

The Wnt/β-catenin signaling pathway is a critical regulator of development and stem cell maintenance. Mounting evidence suggests that the context-specific outcome of Wnt signaling is determined by the collaborative action of multiple transcription factors, including members of the highly conserved f...

ORGANISM(S): Homo sapiens (Human)

2023-04-19 | PXD038811 | Pride

red fox and corsac fox

gut Metagenome of red fox and corsac fox

PRJNA646811 | ENA

Lycalopex culpaeus strain:Andean fox

Lycalopex culpaeus strain:Andean fox Genome sequencing

PRJNA232708 | ENA

Polar Fox Lagoon sediment

Polar Fox Lagoon sediment Metagenome

PRJNA821074 | ENA

Requirement for Shh and Fox family genes at different stages in sweat gland development

Sweat glands play a fundamental role in thermal regulation in man, but the molecular mechanism of their development remains unknown. To initiate analyses, we compared the model of Eda mutant Tabby mice, in which sweat glands were not formed, to wild-type mice. We inferred developmental stages and c...

ORGANISM(S): Mus musculus

2010-05-05 | E-GEOD-14907 | biostudies-arrayexpress

Gray and Island Fox

Gray fox (Urocyon cinereoargenteus) and island fox (Urocyon littoralis) Raw sequence reads

PRJNA478450 | ENA

Vulpes lagopus breed:blue fox

Vulpes lagopus breed:blue fox Genome sequencing

PRJNA644252 | ENA

Leptospira interrogans serovar Pomona str. Fox 32256

Leptospira Genomics And Human Health

PRJNA177162 | ENA

Gene expression in aerial parts of rice-Arabidopsis Os-LBD37 FOX plants

Aerial parts of the rice-Arabidopsis FOX (Full-length cDNA overexpressor) lines K16331 and K19624 harboring the rice FL cDNA of LBD37 (Os-LBD37) were analyzed. LBD37 belongs to the plant- specific LOB- (Lateral Organ Boundary) domain family proteins first characterized in Arabidopsis. Results point ...

ORGANISM(S): Arabidopsis thaliana

2009-12-26 | E-GEOD-14646 | biostudies-arrayexpress

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