Francis M M - OmicsDI

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Unknown (5107)
Proteomics (361)
Transcriptomics (117)
Genomics (82)
Metabolomics (50)
Models (6)
Other (1)

Organisms

Homo sapiens (300)
Mus musculus (86)
Saccharomyces cerevisiae (31)
Rattus norvegicus (11)
Drosophila melanogaster (6)
Apis mellifera (5)
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (4)
Arabidopsis (3)
Melampsora laricis-populina (2)
Saccharina latissima (2)
Campylobacter jejuni (2)
Populus trichocarpa (2)
Poeciliopsis gracilis (1)
Piloderma croceum (1)
Oidiodendron maius (1)
Suillus luteus (1)
Amanita muscaria (1)
Tulasnella calospora (1)
Hebeloma cylindrosporum (1)
Serendipita vermifera (1)
marine sediment metagenome (1)
Secale cereale x Triticum turgidum subsp. durum (1)
Corylus avellana (1)
Nostoc punctiforme PCC 73102 (1)
Agaricus bisporus var. bisporus H97 (1)
Candidatus Pelagibacter ubique HTCC1062 (1)
Laccaria bicolor S238N-H82 (1)
Mustela putorius furo (1)
Populus deltoides (1)
Populus trichocarpa x Populus deltoides (1)

Organisms

Mus musculus (4)
Homo sapiens (2)
Corynespora cassiicola (1)
Mycobacterium tuberculosis (1)
human lung metagenome (1)

Repository

pride (345)
biostudies-arrayexpress (132)
EGA (51)
MetaboLights (48)
ENA (16)
MassIVE (11)
BioModels (4)
jPOST (4)
GNPS (2)
PMR (2)
iProX (1)
PanoramaPublic (1)

Tissue

Cell culture (73)
Epithelial cell (23)
Blood plasma (18)
Brain (18)
HeLa cell (17)
Fibroblast (16)
Permanent cell line cell (13)
Blood (12)
Macrophage (9)
Cell suspension culture (6)
Erythrocyte (6)
Lung (6)
Blood cell (5)
Primary cell (5)
Stem cell (5)
Whole body (5)
B cell (4)
Early embryonic cell (4)
Hepatocyte (4)
Kidney (4)
Liver (4)
Bone marrow (3)
Dendritic cell (3)
Saliva (3)
Skin (3)
T cell (3)
Cell line cell (2)
Colon (2)
Diploid cell (2)
HEK-293T cell (2)

Disease

Plasmodium falciparum malaria (8)
Cervix carcinoma (7)
Listeriosis (5)
Malaria (5)
Parkinson's disease (4)
Alzheimer's disease (3)
Breast cancer (3)
Colon cancer (3)
Disease free (3)
Neuroblastoma (3)
Non-small cell lung carcinoma (3)
Pancreatic cancer (3)
Toxoplasmosis (3)
COVID-19 (2)
Cardiovascular system disease (2)
Leukemia (2)
Lewy body dementia (2)
Neurodegenerative disease (2)
Noonan syndrome (2)
Plasmodium malariae malaria (2)
Psoriasis (2)
Tauopathy (1)
Extra-adrenal sympathetic paraganglioma (1)
Locally advanced breast carcinoma (LABC; non-inflammatory) (1)
Wilms' tumor (1)
Acute enteritis (1)
Acute leukemia (1)
Amyotrophic lateral sclerosis (1)
Brain cancer (1)
Buruli ulcer disease (1)

Technology Type

Mass Spectrometry (345)
Shotgun proteomics (135)
Bottom-up proteomics (69)
Affinity purification coupled with mass spectrometry proteomics (62)
Mass spectrometry (43)
Data-dependent acquisition (32)
SWATH MS (26)
Gel-based experiment (25)
Chemical cross-linking coupled with mass spectrometry proteomics (24)
Data-independent acquisition (22)
HDMSE (7)
Mass spectrometry assay (4)
NMR spectroscopy (4)
SRM/MRM (3)
Immunopeptidomics (2)
MSE (2)
Top-down proteomics (2)
Affinity proteomics (1)
DiaPASEF (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (16)
Liquid Chromatography MS - negative - reverse phase (14)
Illumina NovaSeq 6000 (9)
N/A (8)
Maxwell RSC Instrument (6)
Q Exactive (5)
Agilent High resolution C scanner (4)
Liquid Chromatography MS - positive - hilic (4)
Illumina HiSeq 4000 (3)
Orbitrap Fusion (3)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (3)
Liquid Chromatography MS - negative - hilic (3)
Illumina NovaSeq X (2)
Illumina HiSeq 2500 (2)
LTQ Orbitrap Velos Pro (2)
Bruker (2)
Exactive (Thermo Scientific) (2)
Gas Chromatography MS - Positive (GC-MS (Positive)) (2)
Gas Chromatography MS - positive (2)
LECO Pegasus 4D (2)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (2)
Liquid Chromatography MS - alternating - hilic (2)
Liquid Chromatography MS – negative - reverse phase (2)
Liquid Chromatography Tandem MS (LC-MS/MS) (2)
Illumina Genome Analyzer (1)
NextSeq 2000 (1)
BGISEQ-500 (1)
LTQ Orbitrap Velos (1)
Orbitrap Exploris 480 (1)
Q Exactive HF (1)

Publication Date

2025 (73)
2026 (61)
2022 (50)
2024 (46)
2020 (43)
2021 (38)
2023 (35)
2012 (33)
2018 (31)
2019 (23)
2015 (20)
2010 (19)
2017 (17)
2013 (14)
2014 (12)
2011 (11)
2016 (10)
2007 (5)
2008 (3)

UNIPROT ID/AC

O81713 (3)
Q8L500 (3)
Q93WK5 (3)
Q9LKL2 (3)
O95816 (1)
P10636 (1)
P11142 (1)
Q16543 (1)
Q71U36 (1)
Q9UNE7 (1)

CHEBI ID

CHEBI:30769 (21)
CHEBI:16704 (17)
CHEBI:17568 (17)
CHEBI:27897 (16)
CHEBI:27266 (15)
CHEBI:28044 (15)
CHEBI:15741 (14)
CHEBI:16335 (14)
CHEBI:16449 (14)
CHEBI:17596 (14)
CHEBI:15428 (13)
CHEBI:15756 (13)
CHEBI:15891 (13)
CHEBI:17368 (13)
CHEBI:25017 (13)
CHEBI:28842 (13)
CHEBI:16865 (12)
CHEBI:17964 (12)
CHEBI:17992 (12)
CHEBI:18186 (12)
CHEBI:24898 (12)
CHEBI:28300 (12)
CHEBI:6650 (12)
CHEBI:15354 (11)
CHEBI:15603 (11)
CHEBI:16010 (11)
CHEBI:16196 (11)
CHEBI:33699 (3)
CHEBI:15422 (1)
CHEBI:16761 (1)

Metabolite Name

Uracil (13)
Hypoxanthine (11)
Creatine (10)
Inosine (10)
Adenosine (9)
Creatinine (9)
L-Arginine (9)
Sucrose (9)
Valine (9)
Choline (8)
Citric acid (8)
Glutamine (8)
Glycine (8)
L-Leucine (8)
L-Proline (8)
L-Tyrosine (8)
Phenylalanine (8)
Taurine (8)
Tryptophan (8)
Uric acid (8)
Uridine (8)
Xanthine (8)
5'-Methylthioadenosine (7)
Isoleucine (7)
L-Glutamine (7)
L-Isoleucine (7)
L-Lysine (7)
L-Phenylalanine (7)
L-Valine (7)
Leucine (7)

First Public Date

2025 (7)
2020 (4)
2024 (1)
2021 (1)
2019 (1)
2018 (1)
2015 (1)

Modelling Approach

Ordinary differential equation model (4)

Lab affiliation

The Francis Crick Institute (13)
Center for Structural Biology, Center for Cancer Research, National Cancer Institute (NCI), National Institutes of Health, Frederick, MD 21702-1201, USA (11)
NCI/NIH CSB (10)
Chromosome Segregation Laboratory The Francis Crick Institute Midland Road London NW1 1AT (6)
Imperial College London (5)
Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany; Wellcome Centre for Cell Biology, University of Edinburgh, Edinburgh EH9 3BF, UK. (4)
Department of Chemistry, Imperial College London, Molecular Sciences Research Hub, London, W12 0BZ, UK The Francis Crick Institute, London, NW1 1AT, UK (4)
Crick-GSK LinkLabs, UK (3)
Department of Chemistry, Imperial College London, Molecular Research Science Hub, 80 Wood Lane, London W12 0BZ, United Kingdom. The Francis Crick Institute, 1 Midland Road, London NW1 1AT, United Kingdom. (3)
Head of Proteomics The Francis Crick Institute 1 Midland Road London NW1 1AT U.K. (3)
Markus Ralser, Prof. Dr. Einstein Professor of Biochemistry Head, Institute of Biochemistry, Charité University Medicine, Berlin markus.ralser@charite.de Senior Group Leader, The Francis Crick Institute, London markus.ralser@crick.ac.uk (3)
Protein Biogenesis Laboratory, Francis Crick Institute, London, UK (3)
VIB-UGent Center for Medical Biotechnology UGent Department of Biomolecular Medicine Technologiepark-Zwijnaarde 75 B9052 Gent Belgium (3)
VIB-UGent Center for Medical Biotechnology, VIB Ghent, Belgium Department of Biomolecular Medicine, Ghent University, Ghent, Belgium (3)
VIB-UGent Center for Medical Biotechnology, VIB, Ghent, Belgium (3)
Charité Universitätsmedizin Berlin, Institute of Biochemistry (2)
Charité – Universitätsmedizin Berlin, Department of Biochemistry, 10117 Berlin, Germany; The Francis Crick Institute, Molecular Biology of Metabolism Laboratory, London NW11AT, UK (2)
Department of Oncology-Pathology, Karolinska Institutet and Science for Life Laboratory, Stockholm, Sweden (2)
Division of Cardiovascular Medicine, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, 75 Francis Street, Boston, MA, 02115, USA (2)
Division of Cell Biology MRC Laboratory of Molecular Biology Francis Crick Avenue Cambridge CB2 0QH, UK (2)
Francis Crick Institute 1 Midland Road London NW1 1AT (2)
GSK Chair in Chemical Biology, Imperial College London Satellite Group Leader, Francis Crick Institute Founder & SAB, Myricx Bio https://myricxbio.com/ Room 301B, Molecular Sciences Research Hub, White City Campus 82 Wood Lane, London W12 0BZ, UK Tel.: 020759 + Ext. 43752 or 45821 (group) http://www.imperial.ac.uk/tate-group/ (2)
Head of research group Quantitative and Systems Biology; Max Planck Institute for Multidisciplinary Sciences; Goettingen (D); Germany (lab head). (2)
Institut Pasteur Unité des Interactions Bactéries-Cellules, Inserm U604, INRA USC2020 25 rue du Dr. Roux 75015 Paris France (2)
Lab Head (2)
Laboratory of Chemical Biology and Microbial Pathogenesis, The Rockefeller University, New York, NY 10065, USA (2)
Laboratory of chemical biology and microbial pathogenesis, The Rockefeller University, New York, USA (2)
Leibniz Institute on Aging – Fritz Lipmann Institute (FLI) Beutenbergstrasse 11 07745 Jena, Germany (2)
MRC Laboratory of Molecular Biology Francis Crick Avenue Cambridge Biomedical Campus CB2 0QH Cambridge UK (2)
MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge, CB2 0QH, UK. (2)

IsPrivate

False (4)

Classification

bacteria (1)

Modification

15.994915 (2)
4-tetrahydrothiazine-3-carboxylic acid (2)
42.010565 (2)
+3amu) (1)
-17.026549 (1)
27.994915 (1)
45.029395 (1)
57.021464 (1)
6.020129 (1)

Study type

Transcription profiling by array (62)
RNA-seq of coding RNA (31)
ChIP-seq (14)
Unknown experiment type (4)
Comparative genomic hybridization by array (4)
Methylation profiling by array (4)
Animal - One-color microarray (3)
Transcription profiling by tiling array (2)
RNA-seq of coding RNA from single cells (2)
Animal - High-throughput sequencing (1)
Other (1)
ScATAC-seq (1)
MicroRNA profiling by array (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of non coding RNA (1)

Release Date

2021 (591)
2022 (553)
2023 (531)
2024 (492)
2020 (464)
2025 (459)
2019 (398)
2016 (325)
2018 (307)
2017 (288)
2015 (266)
2014 (129)
2013 (91)
2012 (83)
2026 (69)
2010 (56)
2011 (55)
2009 (23)
2008 (18)
2007 (12)
2006 (9)
2005 (6)
2002 (3)
2004 (2)
2003 (2)
2001 (2)
1999 (2)
2000 (1)

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Metabolome analysis reveal key regulatory pathways of feed conversion efficiency of oriental river prawn Macrobrachium nipponense

A total of 445 and 247 differently expressed metabolites (DEMs) were identified in the hepatopancreas and muscle. In addition, 11 KEGG pathways, which mainly include lysine biosynthesis, lysine degradation, aminoacyl-tRNA biosynthesis and purine metabolism, were sign...

2023-02-28 | MTBLS6663 | MetaboLights

Structural basis for Fc receptor recognition of immunoglobulin M.

Not available

S-EPMC7614769 | biostudies-literature

Untargeted metabolomics profiling reveals exercise intensity-dependent alterations in Thoroughbred racehorses’ plasma after routine conditioning sessions

Thoroughbred (TB) racehorses are subjected to rigorous conditioning programs involving exercise sessions of various types, distances and intensities. These programs aim to optimize both their physical and mental capabilities, which are essential to achieve maximal performance. Conventional invest...

2024-01-16 | MTBLS8285 | MetaboLights

Cryomicroscopy reveals the structural basis for a flexible hinge motion in the immunoglobulin M pentamer.

Not available

S-EPMC9588798 | biostudies-literature

Tracking immunodynamics by identification of S-G₂/M-phase T cells in human peripheral blood.

Not available

S-EPMC7527781 | biostudies-literature

Cyclin Specificity Governs Centrosomal Cyclin/CDK Localisation and is Necessary for the G2/M Transition

In eukaryotes, cyclin/CDK complexes drive cells through DNA replication and mitosis, establising cell cycle temporal order. The fission yeast S. pombe is able to function with a single cyclin/CDK complex, with cell cycle order emerging from differential substrate sensitivities to CDK activity. What ...

ORGANISM(S): Schizosaccharomyces pombe 927

2019-05-27 | PXD011987 | Pride

Cdk mitosis tmt phosphorylation